Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3898g00001 ATGAACCCTCATGCTTCAAACACCCACTTGAATGCCCCTCATCTCTCCGAGCTCCCTGCAACGATGCCGTTTCAGGATGCGTCGGCGGTGCTCGGCCGTACCTCCAGCTTCCGGAGCATTTTCTCCGCCGAGAACTGGGCGGAGCTGCCGCTGAAGGAGGACGACGCTGACGACATGGTTATCTACGGCGCTCTGCTTGAGGCCGCCGCCACCACCGGATGGTTCCCGGCAAATGGCAGTGGGGTGAGCAAAGTACCAGTTAAAAAGGAAAATGGGGGTGAAAGCAGTGGCACCAAAGGCGAGAGTGGAACTCACGCGCCTCCGGTGAAGGGGTTGAGCTACCGAGGCGTGCGGAGGAGGCCGTGGGGAAAGTTTGCGGCGGAGATAAGAGATGCTAAGAGGAATGGTGTGAGAGTGTGGCTTGGAACCTATGAAACTGCTGAGGACGCAGCTTTGGCATATGATCGAGCTGCGTTTCGAATGCATGGCTCCAAAGCAAAGCTCAATTTTCCACATTTGATTGGTTCGGATGAAGCCGAACCGATTAGGGTTACATCAAAGAAACGTTCGTTGAATGTTTTACCGTTGGTGACTGCAAAACGGAGTAAAGATAATTCTTTGGTTATTCGGAGATGA 636 0.5377 MNPHASNTHLNAPHLSELPATMPFQDASAVLGRTSSFRSIFSAENWAELPLKEDDADDMVIYGALLEAAATTGWFPANGSGVSKVPVKKENGGESSGTKGESGTHAPPVKGLSYRGVRRRPWGKFAAEIRDAKRNGVRVWLGTYETAEDAALAYDRAAFRMHGSKAKLNFPHLIGSDEAEPIRVTSKKRSLNVLPLVTAKRSKDNSLVIRR 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3898g00001 211 Gene3D AP2/ERF domain 113 172 IPR036955 GO:0003700|GO:0006355
Vium3898g00001 211 SMART rav1_2 113 177 IPR001471 GO:0003700|GO:0006355
Vium3898g00001 211 CDD AP2 114 173 IPR001471 GO:0003700|GO:0006355
Vium3898g00001 211 ProSiteProfiles AP2/ERF domain profile. 113 171 IPR001471 GO:0003700|GO:0006355
Vium3898g00001 211 Pfam AP2 domain 114 163 IPR001471 GO:0003700|GO:0006355
Vium3898g00001 211 PANTHER DNA-BINDING DOMAIN 92 182 IPR044808 GO:0003700|GO:0009873
Vium3898g00001 211 MobiDBLite consensus disorder prediction 80 113 - -
Vium3898g00001 211 SUPERFAMILY DNA-binding domain 114 172 IPR016177 GO:0003677
Vium3898g00001 211 FunFam Ethylene-responsive transcription factor 2 113 172 - -
Vium3898g00001 211 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
Vium3898g00001 211 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3898g00001 Vium-Chr3898 5928 6563 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3898g00001 28 190 AP2-EREBP Transcription Factor Family AT2G44840 55.215 9.17e-58 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium3898g00001 AP2 3.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3898g00001 K09286 - gmx:100804762 254.603