Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3895g00019 ATGGCGCTGCCATGGTTGAGATTGAAACCAAAACCAAAACCTTCACTTTCAATAATCCTAACCACAACTCTCATTCTTCTCGTATTCTTCTTCTTCTCAATAAACCCTCCTTCTCCCATTTCCACACCACGGAGGTCACTCCTCCTCGCTCCCTCACCGTGTGCTGCCAAATCCAATGGAATCCTCAAATACCAATGTTTCTTCCCACAACACACCGCTCTCTCCATTCCCATCCTCTCCCTATTCCTCCTCCTCCACTTCTACATCCTCATCACCACCGCCCAGGACCACTTCTCCCTCGTCACCACCAAACTCGCCTCCCACCTCGCCCTCTCCCCCAGCATGGCCGCCGTCACGCTTCTCTCCCTCGGCAACGGTGCTCCCGACGTCTTCTCCTCACTCGCAGCCCTCTGCGCCGGCCAGTACCGCACTGGCTTCGGCGCTATACTCTCTGCCGGCACCTTCGTCTCCGACCTCGTCGTGGGCTTCGTCGCCATCTACGCCGCGCCCTTCTCCGTTGATCCCGCGCCTTTCGTTAGGGATGTTCTCTTCTACCTCACCGCTGCAATGTTCCTCTTCTACGTATACCTTAGCGCGGAGATTTTCCTTTGGCAGGCCGTCGGCTTCGTTGCCTTCTACTTGTTCTTCGTAGGGTTTGTCTTCTACATGGATTTGGGGATGGCAGCGCGTCAAAAGAGTTCCGCGTATCTCGAGGGACAGTTGGCATCGGATCCTGACGCTGTGGTTTCTAGATCAGTCGAGGGAGACAAACGCGCTTCTGGAGTGCGTGGAGCGTTTCGATTGATTTCTAAAACATGGGAGCTTCCTGTGGAAGCCGTCCTCAGATTGACGATCCCTCAACCAGCACCAGCACCAGCACAATGGAGCAGATTTTATGCATCAGCCAATATTGCACTTTGTCCACTGGCCCTCTTGTACGCCTGCAACTCGTTCATGCCATTTAATCACTCCATAGTTTTCCTCCTCCCCAACACTCACTTTCCCCTCTGGTCAGTAGTTTTCATGACAAGTTTCTCTCTTGCATTTCTTCATTTTATAATCGAAAAGGAACCCCCAAAAACAGAGCATCTGCCCGTGGTTGTCATGGCATTTATGATGAGCGTGTTCTGGATATCTACTACAGCTGGAGAGCTGGTGAACTGCCTGGAAGCTATAGGCACACATCTCAAACTGCCGCCAGCACTCCTGGGTCTTACCGTACTGGCATGGGGAAATTCAGTAGGTGATCTTGTGGCCGATGTTGCAGTTGCTAAAGCCGGTCATCCGGCGATGGCGATGGCGGGATGTTTCGCCGGACCAATGTTCAACATGCTTGTTGGCCTTGGAAGTGCATTAGTCATACAGACGGCCAATATATATCCTAGAGCTTATCAGCTTAATTTCCACGTTGGTATAGTGATGGCATTTGTATTCCTGCTTTTAAGCCTTATGGGGTCTCTCTTAGTGATCACTTGGTGCAGATTCAGAGTGCCTAGGTTTTGGGGATTCTGTCTAGTAGGCATCTATGCTGCTTTTACGGCAGCAAGTTTAGGAATATCTATGTTCTCGGGGTGA 1575 0.5137 MALPWLRLKPKPKPSLSIILTTTLILLVFFFFSINPPSPISTPRRSLLLAPSPCAAKSNGILKYQCFFPQHTALSIPILSLFLLLHFYILITTAQDHFSLVTTKLASHLALSPSMAAVTLLSLGNGAPDVFSSLAALCAGQYRTGFGAILSAGTFVSDLVVGFVAIYAAPFSVDPAPFVRDVLFYLTAAMFLFYVYLSAEIFLWQAVGFVAFYLFFVGFVFYMDLGMADXRQKSSAYLEGQLASDPDAVVSRSVEGDKRASGVRGAFRLISKTWELPVEAVLRLTIPQPAPAPAQWSRFYASANIALCPLALLYACNSFMPFNHSIVFLLPNTHFPLWSVVFMTSFSLAFLHFIIEKEPPKTEHLPVVVMAFMMSVFWISTTAGELVNCLEAIGTHLKLPPALLGLTVLAWGNSVGDLVADVAVAKAGHPAMAMAGCFAGPMFNMLVGLGSALVIQTANIYPRAYQLNFHVGIVMAFVFLLLSLMGSLLVITWCRFRVPRFWGFCLVGIYAAFTAASLGISMFSG 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3895g00019 525 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 267 523 - -
Vium3895g00019 525 Pfam Sodium/calcium exchanger protein 369 518 IPR004837 GO:0016020|GO:0055085
Vium3895g00019 525 Pfam Sodium/calcium exchanger protein 80 221 IPR004837 GO:0016020|GO:0055085
Vium3895g00019 525 Gene3D - 301 518 IPR044880 -
Vium3895g00019 525 Gene3D - 111 254 IPR044880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3895g00019 Vium-Chr3895 122915 125635 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3895g00019 20 524 Antiporters AT1G08960 64.981 0.0 616
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3895g00019 K13754 - gmx:100775437 798.505