Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3895g00017 ATGGCGCTGCCATGGTTGAGATTGAAACCAAAACCAAAACCTTCTTCACTCTCAATAATCCTAACCACCACTCTCATTCTTCTCGTATTCTTCTTCTTCTCGATAAACCCTCTTTCTCCCATTTCCACACCACGGAGGTCACTCCTCCTCGCTCCCTCACCGTGTTCCGCCAAATCCGATGGAATCCTCAAATACCAATGTCTCTTCCCACAACACACCGCTCTCTCTATTCCCATCCTCTCCCTATTCCTCCTCCTCCACTTCTACATCCTCATCACCACCGCCCAGGACCACTTCTCCCTCGTCACCACCAAACTCGCCTCCCACCTCGCCCTCTCCCCCAGCATGGCCGCCGTCACGCTTCTCTCCCTCGGCAACGGTGCCCCCGACGTCTTCTCCTCACTCGCAGCCCTCCGCGCCGGTCAGTACCGCACTGGCTTCGGCGCTATACTCTCCGCCGGCACCTTCGTCTCCGCCCTCGTCGTGGGCTTCGTCGCCATCTACGCCGCGCCCTTCTCCGTCGATCCCGCGCCTTTCGTTAGGGATGTTCTCTTCTACCTCACCGCTGCAATGTTCCTCTTCTACGTATACCTTAGCGCCGAGATTTTCCTTTGGCAGGCCGTCGGCTTCGTTGCCTTCTACTTGTTCTTCGTAGGGTTTGTCTTCTACATGGATTTCGGGATGGCGGATCGCGCTCAAAAGAGTTCCGCGGATCTCGAGGGACAGTTGGAATCGGATCCCGACGCTGTAGTTTCGAGATCAGTCGAGGGAGAGAAACGCGCTTCTGGAGTGCGTGGAGCGTTTCGATTGATTTCAAAAACATGGGAGCTTCCTGTGGAAACTGTCCTCAGATTGACGATCCCTCAACCAGTACCAGCACAATGGAGCAGATTTTATGCATCAGCCAATATTGCACTTTGTCCACTTGCCCTCTTGTACGCCTGCAACTCGTTCATGCCATTTAATCACTCCATAGTTTTCCTCCTCCCCAACACTCACTTTCCCCTCTGGTCAGTTGTTTTCATGGCAAGTTTCTCTCTTGCATTTCTTCATTTTATAATCGAAAAGGAACCCCCCAAAACAGAGCATCTGCCGGTGGTTGTCATGGCATTTGTGATGAGCGTGTTCTGGATATCTACTACAGCTGGAGAGCTGGTGAACTGCCTGGAAGCTATAGGCACACATCTCAAACTGCCCCCAGCACTTCTGGGTCTTACTGTGCTGGCATGGGGAAATTCAGTGGGTGATCTTGTTGCCGATGTTGCAGTTGCTAAAGCCGGTCATCCGGCGATGGCTATGGCCGGATGTTTTGCCGGACCAATGTTCAACATGCTTGTTGGCCTTGGAAGTGCATTAGTCATACAGACGGCCAATGTATATCCTAGAGCTTATGAGCTTAATTTCCACGTTGGTATAGTGATGGCATTTGTATTCCTGCTTTTAAGCCTTATGGGGTCTCTCTTAGTGATCACTTGGTGCAGATTCAGAGTGCCTAGGTTTTGGGGATTCTGTCTGGTAGGCATCTATGCTACTTTTACGGCAGCAAGTTTAGGAATAGCCATGTTCTCAGGGTGA 1575 0.5168 MALPWLRLKPKPKPSSLSIILTTTLILLVFFFFSINPLSPISTPRRSLLLAPSPCSAKSDGILKYQCLFPQHTALSIPILSLFLLLHFYILITTAQDHFSLVTTKLASHLALSPSMAAVTLLSLGNGAPDVFSSLAALRAGQYRTGFGAILSAGTFVSALVVGFVAIYAAPFSVDPAPFVRDVLFYLTAAMFLFYVYLSAEIFLWQAVGFVAFYLFFVGFVFYMDFGMADRAQKSSADLEGQLESDPDAVVSRSVEGEKRASGVRGAFRLISKTWELPVETVLRLTIPQPVPAQWSRFYASANIALCPLALLYACNSFMPFNHSIVFLLPNTHFPLWSVVFMASFSLAFLHFIIEKEPPKTEHLPVVVMAFVMSVFWISTTAGELVNCLEAIGTHLKLPPALLGLTVLAWGNSVGDLVADVAVAKAGHPAMAMAGCFAGPMFNMLVGLGSALVIQTANVYPRAYELNFHVGIVMAFVFLLLSLMGSLLVITWCRFRVPRFWGFCLVGIYATFTAASLGIAMFSG 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3895g00017 524 Gene3D - 112 254 IPR044880 -
Vium3895g00017 524 Gene3D - 300 517 IPR044880 -
Vium3895g00017 524 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 268 522 - -
Vium3895g00017 524 Pfam Sodium/calcium exchanger protein 368 516 IPR004837 GO:0016020|GO:0055085
Vium3895g00017 524 Pfam Sodium/calcium exchanger protein 81 222 IPR004837 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3895g00017 Vium-Chr3895 103090 105809 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3895g00017 18 523 Antiporters AT1G08960 66.292 0.0 633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3895g00017 K13754 - gmx:100775437 817.379