Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3895g00015 ATGGATCATCAAGGGCATGGCCAGAACCCATCTATGGGGGTTGTTGGTAGTGGAGCTCAATTAACATATGGTTCTAACCCATATCAGCAAGGCCAAATAACTGGGCCACCAGGGTCGGTTGTGGCATCTGTTGGGACCATTCAGTCTACTGGTCAACCTGCTGGAGCACAGCTTGGACAGCATCAACTTGCTTATCAGCATATTCATCAGCAACAACAACATCAGCTTCAGCAACAGCTCCAACAATTTTGGTCAAATCAGTACCAAGAAATTGAGAAGGTTACTGATTTCAAGAACCACAGTCTTCCCCTGGCAAGGATCAAGAAAATTATGAAGGCTGATGAGGATGTTAGAATGATTTCAGCTGAGGCACCAGTCATATTTGCAAGGGCATGTGAAATGTTCATATTAGAGTTAACCCTGCGTTCTTGGAATCACACTGAAGAAAACAAAAGGAGAACACTTCAAAAAAATGACATTGCTGCAGCAATCACAAGGACTGACATCTTTGATTTCTTGGTTGACATTGTACCCCGTGAGGACTTGAAAGATGAAGTGCTTGCATCAATCCCTAGAGGAACAATGCCTGTTGGAGGGCCCGCTGATGCACTTCCATACTGCTACATGCCTCCTCAGCATGCTCCTCAAGTTGGAACCGGTGGTGTCATAATGGGTAAGCCTGTGATGGACCCAAACATGTATGCTCAGCAGTCTCACCCCTACATGGCACCACAAATGTGGCCCCAGCCTCCAGACCAACGTCAGCCATCCCCAGAACATTAG 783 0.4649 MDHQGHGQNPSMGVVGSGAQLTYGSNPYQQGQITGPPGSVVASVGTIQSTGQPAGAQLGQHQLAYQHIHQQQQHQLQQQLQQFWSNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVGGPADALPYCYMPPQHAPQVGTGGVIMGKPVMDPNMYAQQSHPYMAPQMWPQPPDQRQPSPEH 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3895g00015 260 SUPERFAMILY Histone-fold 73 173 IPR009072 GO:0046982
Vium3895g00015 260 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
Vium3895g00015 260 FunFam Nuclear transcription factor Y subunit gamma 66 179 - -
Vium3895g00015 260 Pfam Core histone H2A/H2B/H3/H4 69 164 IPR007125 GO:0003677
Vium3895g00015 260 MobiDBLite consensus disorder prediction 1 20 - -
Vium3895g00015 260 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 64 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3895g00015 Vium-Chr3895 83218 85636 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3895g00015 1 247 CCAAT-HAP5 Transcription Factor Family AT1G08970 61.290 7.89e-88 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vium3895g00015 CBFD_NFYB_HMF 5.8e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3895g00015 K08066 - gmx:100527803 463.381