Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3895g00001 ATGATGAAACACCGCCATCACGCAACCCAATTCCTCCTCCTCCTCCAGGTGGTGGTGGCGGCGTCAATTCCAATCGCCGTCGCGCAGTCCCAGCCCTCGCCCAATGAAAACACCGACCCAAGACTAAACACCTTCAACCCCTCTCTAGCCGCAATAATCGTCATATTAGTGGCGGCGCTTTTCGTCATGGCCGTTTTCTCCGTCTACGTACGCCACTGCGCCGATACGCCTTCCAACAGCGTTGGGCCTCTCACGTCCGCACGCTCCAGAAGAGCTGCGCGTGGCCTTGATCCCGCCGTCATCCAAACCTTCCCCACCCTCGAATACTCCGAGGTCAAGATCCACAAGATCGGAAAAGAACCCTTGGAATGCGCGGTGTGTTTGTGCGAGTTTGAAGACACCGAAACGCTGCGTTTGATCCCCAAGTGCGACCACGTGTTCCACCCCGATTGCATAGACGAGTGGTTGAGCTCCCACACCACGTGTCCCGTGTGCCGCGCCAACCTCGTACCGACAGAATCACAGGAATCTGACGCCAACAACGGTGTTGCTGCTGTTCCCGATCCCCAAATGTTAACGCCGGACCTTGAAGCGCAAAACGACGCCGTAGAAGCCACGCCAGAGCAGCAAAACACGGACTCTGACCGTTTCTTGAACGAACCGAAAGTTCTTTCTCTGGAGAAAACGCTGAACCGGAACCGCACACGTGGATCTCGGTCGAACCGGCCGCGCCGGTTCTCGAAGTCGCACTCGACTGGGCACTCGATCGTCCAACCGGGAGAAAATACGGACCGGTTCACTCTGGTACTTCCTTTGGAGGTTCGCAAGCAACTAATAAACCGGCAATTGCATCGTGCAAGTAGCTTGATCGTGTTACCGAGGGAAGGTAGTTCGAGGCGGGGTTACCGAATCGGAGGAGAAGGGAGTAGTCGGGGGAAACATTCGAGTCGGTTGGACCGGAGTTTGAAATCGGACCGATGGATTTTTTCGGTAGCTGCGCCGTTTTTCGCTAGGGCACTGTCTATTAGGTCCCCCAGGGTGCGGAACAACGATGTTGAAAGAATGTCATCGTCATCCACCGTGCCGATTATGCCGCCGACGGCCGTTGACTCGGCTCGGCCACCGGTTTAA 1131 0.5623 MMKHRHHATQFLLLLQVVVAASIPIAVAQSQPSPNENTDPRLNTFNPSLAAIIVILVAALFVMAVFSVYVRHCADTPSNSVGPLTSARSRRAARGLDPAVIQTFPTLEYSEVKIHKIGKEPLECAVCLCEFEDTETLRLIPKCDHVFHPDCIDEWLSSHTTCPVCRANLVPTESQESDANNGVAAVPDPQMLTPDLEAQNDAVEATPEQQNTDSDRFLNEPKVLSLEKTLNRNRTRGSRSNRPRRFSKSHSTGHSIVQPGENTDRFTLVLPLEVRKQLINRQLHRASSLIVLPREGSSRRGYRIGGEGSSRGKHSSRLDRSLKSDRWIFSVAAPFFARALSIRSPRVRNNDVERMSSSSTVPIMPPTAVDSARPPV 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3895g00001 376 MobiDBLite consensus disorder prediction 351 365 - -
Vium3895g00001 376 Pfam Ring finger domain 123 166 IPR001841 -
Vium3895g00001 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 172 IPR013083 -
Vium3895g00001 376 MobiDBLite consensus disorder prediction 202 260 - -
Vium3895g00001 376 SMART ring_2 124 165 IPR001841 -
Vium3895g00001 376 ProSiteProfiles Zinc finger RING-type profile. 124 166 IPR001841 -
Vium3895g00001 376 MobiDBLite consensus disorder prediction 203 218 - -
Vium3895g00001 376 MobiDBLite consensus disorder prediction 351 376 - -
Vium3895g00001 376 CDD RING-H2_EL5-like 123 166 - -
Vium3895g00001 376 MobiDBLite consensus disorder prediction 298 317 - -
Vium3895g00001 376 SUPERFAMILY RING/U-box 117 172 - -
Vium3895g00001 376 MobiDBLite consensus disorder prediction 235 249 - -
Vium3895g00001 376 FunFam E3 ubiquitin-protein ligase ATL6 84 172 - -
Vium3895g00001 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 30 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3895g00001 Vium-Chr3895 11698 13073 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3895g00001 11 360 Rapid Response to Elicitors AT3G05200 42.356 1.18e-86 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3895g00001 K10664 - gmx:100781706 539.65