Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3894g00001 ATGAATGCTAAAGTACAAGACTCTGACGATACCAAAAAGGGTGAAGAAGTTGTGCTTCCTGGCTTTAGATTCCACCCTACAGATGAAGAACTTGTTGGGTTTTATCTCCATAGAAAGGTGGAAAAGAAGCCTCTCAAAATTGAACTCATCAAACAGGTTGATATCTACAAATATGATCCATGGGATCTTCCAAAGGTGAATTCATTTGGGGACAAAGAATGGTATTTTTTCTGCATAAGAGGGAGGAAGTACAGGAACAGTGTGAGGCCAAACAGGGTAACTAGGTCAGGGTTTTGGAAAGCCACAGGAATAGACAAGTCGATATACTGCGTGAAGGAACCCCATGACTGCATTGGCCTGAAGAAGTCTTTGGTGTACTATCGTGGAAGTGCTGGAAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGCCTTCCACCCAATGCTAAATCCTCCGCCAACATTGCTAATACTACCAATAACCTTCATGAAGCTGAGGTGTGGACACTGTGCAGGATCTTCAAACGCATCCCATCTTTCAAAAAGTACAGTCCAAATTTGAAAGACACGACAGCCCTGACGAAATCGAACACTGTGAATTCGAACACAAGCACCTTAGATTCTGAGAACTGCAAGCCATATTTGATCTGCAGAGACCCTGATATGATGCAACAACTAAAGCCAGTATTTGGACAGGTTGATGAAAAGAAACACTTGTTTCTTGGGCAGTTTGGGCAACTACCCCATCTTCAACCACCATCAACCCCTTACCCAACTTTTTGGAATCACAATGTTGAAGACTATGCATTTGCCAATGAAAATTGGGATGATCTCAGATCTGTCGTTCAGTTTGCCATTGATCCTTCCTCGGTCTTTGATTGTACAGAAACACATTTTCCACCCTACTTTTCTTAG 918 0.4248 MNAKVQDSDDTKKGEEVVLPGFRFHPTDEELVGFYLHRKVEKKPLKIELIKQVDIYKYDPWDLPKVNSFGDKEWYFFCIRGRKYRNSVRPNRVTRSGFWKATGIDKSIYCVKEPHDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNAKSSANIANTTNNLHEAEVWTLCRIFKRIPSFKKYSPNLKDTTALTKSNTVNSNTSTLDSENCKPYLICRDPDMMQQLKPVFGQVDEKKHLFLGQFGQLPHLQPPSTPYPTFWNHNVEDYAFANENWDDLRSVVQFAIDPSSVFDCTETHFPPYFS 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3894g00001 305 Gene3D NAC domain 27 180 IPR036093 GO:0003677|GO:0006355
Vium3894g00001 305 FunFam NAC domain-containing protein 35 27 180 - -
Vium3894g00001 305 ProSiteProfiles NAC domain profile. 18 177 IPR003441 GO:0003677|GO:0006355
Vium3894g00001 305 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 202 - -
Vium3894g00001 305 SUPERFAMILY NAC domain 14 176 IPR036093 GO:0003677|GO:0006355
Vium3894g00001 305 Pfam No apical meristem (NAM) protein 20 146 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3894g00001 Vium-Chr3894 2591 7474 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3894g00001 6 177 NAC Transcription Factor Family AT5G39820 58.919 7.00e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium3894g00001 NAM 1.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3894g00001 - - gmx:100819795 544.658