Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3891g00004 ATGGCTGCAACATCAGTGCCTTCTCACATGAAAGCTTGGACTTACTCGGAGTATGGCAAATCCGGCGAAGTTCTCAAGTTTAACAGCAGCGTGGCTTTACCTCCGGTGAAGGAAGATCAGGTCCTCATCAAGGTCGCTGCTGCTTCCATTAACCCCATTGATTACAAGAGAATGGAAGGTCATTTCAAGAACTCCGATTCCCCTTTACCCACTGTTCCGGGATTTGATGTTGCTGGAGTGGTGGTCAAAGTGGGAAGTGAAGTGAAGAAATTCAAGGTTGGCGATGAAGTCTACGGTGATATCAATTTGAAAGCTTTGGAATATCCGAAGGTGATTGGTTCTTTGGCAGAATACACTGCTGCAGAAGAGAGACTATTGGCTCACAAGCCACAGAGTCTGAGCTTTTTTGAGGCTGCTAGCCTTCCTTTAACACTTGAGACAGCTTATGAAGGCCTCGAACGAACTGGGTTCTCTGCAGGTAAATCTATCCTTGTGCTTGGAGGTGCTGGTGGAGTTGGAACCCATGTTATTCAGCTTGCAAAGCATGTATATGGAGCATCCAAGGTAGCAGCCACAGCTAGCACCAGAAAATTGGAGTTATTGAGCAATTTGGGGGCTGACTTGCCAATTGATTATACTAAAGAGAATTTTGAAGACTTGTCTGAAAAGTTTGATGTGGTGTATGATACAGTAGGGCAAACTGAACTGGCATTCAAGGCCTTGAAAGAAGGAGGCAAAGTTGTGACCATAGTACCACCTGGGTTTCCTCCAGCTATATTGTTCATTCTCAGTACTGATGGGGGTATTTTAGAGAAACTAAACCCCTATTTTGAGAGTGGTAAGTTGAAGCCAATACTTGACCCCAAGAGCCCCTTTCCATTTTCTCAGGCTGTTGAAGCCTTTGCCCATCTGGAAACAAACAGGGCAACTGGAAAAGTTGTTATCTATCCCATTCCATGA 960 0.45 MAATSVPSHMKAWTYSEYGKSGEVLKFNSSVALPPVKEDQVLIKVAAASINPIDYKRMEGHFKNSDSPLPTVPGFDVAGVVVKVGSEVKKFKVGDEVYGDINLKALEYPKVIGSLAEYTAAEERLLAHKPQSLSFFEAASLPLTLETAYEGLERTGFSAGKSILVLGGAGGVGTHVIQLAKHVYGASKVAATASTRKLELLSNLGADLPIDYTKENFEDLSEKFDVVYDTVGQTELAFKALKEGGKVVTIVPPGFPPAILFILSTDGGILEKLNPYFESGKLKPILDPKSPFPFSQAVEAFAHLETNRATGKVVIYPIP 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3891g00004 319 Pfam Zinc-binding dehydrogenase 204 315 - -
Vium3891g00004 319 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 2 319 IPR044626 GO:0016628
Vium3891g00004 319 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 160 181 IPR002364 GO:0008270|GO:0016491
Vium3891g00004 319 Gene3D - 17 315 - -
Vium3891g00004 319 Pfam Alcohol dehydrogenase GroES-like domain 39 102 IPR013154 -
Vium3891g00004 319 Gene3D - 152 266 - -
Vium3891g00004 319 CDD MDR_like_2 10 315 - -
Vium3891g00004 319 SMART PKS_ER_names_mod 22 315 IPR020843 GO:0016491
Vium3891g00004 319 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 133 259 IPR036291 -
Vium3891g00004 319 SUPERFAMILY GroES-like 6 167 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3891g00004 Vium-Chr3891 78429 82053 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3891g00004 30 231 Monolignol Biosynthesis Gene Families AT3G19450 25.431 5.89e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3891g00004 K18980 - gmx:100817947 560.836