Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3891g00003 ATGGATTGCAGAATAGAGAGTACAGAAACTCACAGGAATAAGTGTGCAGCATGCTTCAGACAGTTCAACAAACTGGAGCACCTTGTGGAGCACATGAGGATCTCGTATCATTCAGTTCATGAGCCAACCTGTGGCATTTGCAGGAAACACTGCAGGTCATTTGAGTCTCTAAGGGAACATCTCATAGGTCCATTGCCAAAGCAGGAATGCAGAGATATATTTGCCTATAGAGGGTGCAAGTTTTGCTTGAAAGTGTTTGACAGCCCTAATTCTCGCAGGATTCACCAAGAAAAATGCCAACACTCTGGAACAAATGCTGGAATAATTGGTCGCTTTTCAAACTTAGGACTTCGTGATAATTTGGCCATTAGTGGTGGAGCAAGAGGACCACAAGTAGTTGCATTAGCATGTAAAATGGTTGGAGGTGGCAGTGATGGCTCACTCGATCTCTGTGGAAGAGTGTGCTTAACCGATGAGCATGAGAACATCATATTCCATTCTTATGTGAAGCCACCAATTCCTGTCACAAACTACAGGTTGGACAATTAA 549 0.4353 MDCRIESTETHRNKCAACFRQFNKLEHLVEHMRISYHSVHEPTCGICRKHCRSFESLREHLIGPLPKQECRDIFAYRGCKFCLKVFDSPNSRRIHQEKCQHSGTNAGIIGRFSNLGLRDNLAISGGARGPQVVALACKMVGGGSDGSLDLCGRVCLTDEHENIIFHSYVKPPIPVTNYRLDN 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3891g00003 182 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 42 IPR013087 -
Vium3891g00003 182 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 18 179 IPR047021 GO:0004527
Vium3891g00003 182 SMART c2h2final6 13 37 IPR013087 -
Vium3891g00003 182 SMART c2h2final6 42 62 IPR013087 -
Vium3891g00003 182 SMART c2h2final6 77 101 IPR013087 -
Vium3891g00003 182 ProSitePatterns Zinc finger C2H2 type domain signature. 15 37 IPR013087 -
Vium3891g00003 182 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Vium3891g00003 182 Gene3D - 129 181 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3891g00003 Vium-Chr3891 45012 46127 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3891g00003 1 182 C2H2 Transcription Factor Family AT3G27970 69.730 1.05e-96 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium3891g00003 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3891g00003 - - vum:124835998 385.571