Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3890g00001 AATTTTTCCCACCTTTTCTCCCTTCGTGTCGTCTCTTTCCTTGCGTCTTCTCCATGTTCTTCTCTTCTGTGTTTTCTTCCAAACTTTCGTGTGCTCTGCCGCTTGATCTTTGATGCCGTCAGCTGCGACAGAACCTCTCGCTACCGCTATCGCCAGTGTGGCGACGACGAAGGAAACGTTGGTGACTTTAGCTTGGTCGCTAGCCATGCAGAGAAGGAGGAGAGGTCAGAGAAGAGGTCGGATGTGCTGAACGCGACGGAGACAAAAACGAATGCGGAGGCGGAGAGGAAAGAGGAGGCATTGACGGAGCTGAAGCGAGTGGTGAAGGAGTTGCGCGAAGAAGACCTCTCGATGCAGGTCGCGGCGGAGGGAGTGAGGTCGCTGGCGAAGGAAGATGTTGAAGCGAGAGCTAATCTCACAATGCTTGGAGTAATTCCTCCTCTCGTCGAAATGCTCGATTCGGAAGACGCTCATTCACGAATCGCTTTGCTCTATGCTTTGCTTAATCTCGGAATCGGTAACGATGTAAACAAAGCGACTGTAGTGAAAATTGACACTGTACACAAGATGCTAAAACTAATTGAATCAAGTGATTCAAATTCGTCGGTGGCTGAAGCGATTGTTGCGAATTTCCTTGGATTGAGTGCTTTGGATTCAAATAAACCCATAGTTGGTTCCTCCGGTGCAATACCATTCCTTGTTATCACCCTAAAAAATTTAGAGGCTAGTAAAACCGTATCACAATCCCAATGGCAAGTGAAGCAAGATGCTCTGCGCGCTTTGTACAATCTTTCAATATGATTGTAAAAACTTTCAGTTATTCTGGAGACTGATTTAGTTTGGCTTTTAGTTAGCTCGGAAGAGAGCCTCAAGAATATTTGA 882 0.466 NFSHLFSLRVVSFLASSPCSSLLCFLPNFRVLCRLIFDAVSCDRTSRYRYRQCGDDEGNVGDFSLVASHAEKEERSEKRSDVLNATETKTNAEAERKEEALTELKRVVKELREEDLSMQEXAAEGVRSLAKEDVEARANLTMLGVIPPLVEMLDSEDAHSRIALLYALLNLGIGNDVNKATVVKIDTVHKMLKLIESSDSNSSVAEAIVANFLGLSALDSNKPIVGSSGAIPFLVITLKNLEASKTVSQSQWQVKQDALRALYNLSIXLXKLSVILETDLVWLLVSSEESLKNI 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3890g00001 294 Coils Coil 94 120 - -
Vium3890g00001 294 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 29 287 - -
Vium3890g00001 294 SMART arm_5 133 173 IPR000225 GO:0005515
Vium3890g00001 294 SMART arm_5 218 267 IPR000225 GO:0005515
Vium3890g00001 294 SUPERFAMILY ARM repeat 103 270 IPR016024 -
Vium3890g00001 294 Gene3D - 98 292 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3890g00001 Vium-Chr3890 36874 37851 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3890g00001 99 285 U-box Gene Family AT2G23140 32.620 1.65e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3890g00001 - - vum:124835994 530.406