LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium3883g00004	ATGTCTTCTAGGGAGAACAAATCAAACATCTTGATGCAAAAATATGAACTAGGAAGGTTACTAGGTAAAGGAACGTTTGGAAAGGTTTACTATGGCCGTAGTACAATAACTAACCAAGGTGTGGCCATTAAAGTGATTGACAAGAATAAGGTTATAAAAGCTGGGCAGGTTGATCACGTTAAAAGGGAAATATCTATTATGAGACTGGTGAAGCACCCAAATGTTATTGAGCTTTTTGAGGTCATGGCCACAAAGAGTAAGATTTACTTTGTTATGGAATATGCTAAAGGTGGGGAACTGTTTAAGAAGGTGGCCAAAGGAAAGCTCAAAGAAGATGTTGCACACAAATATTTTATTCAGCTAGTGAATGCAGTGGATTTTTGTCACAGTAGAGGTGTATGCCATAGAGATATAAAGCCAGAGAACATTCTGTTGGATGAAAATGATAATCTGAAGATCTCAGATTTCGGGTTAAGTGCCCTGGCTGAATCCAAACACCAAGATGGCTTGTTGCACACAGCTTGTGGAACACCTGCCTATGTTGCTCCTGAGGTCATCAAAAGGAAAGGTTATGATGGTGCAAAAGCTGATATTTGGTCATGTGGGGTAGTTTTGTTTGTCTTACTAGCAGGTTACATCCCTTTCCAAGATCCTAATTTGATGGTGATGTATAGGAAGATAAGCAAGGCAGAGTTTACATGTCCTAGATGGCTCCCAAGAGGAGTTCGGAGGCTATTGAGCAAGATGTTGGATCCAAATCCAAACACTAGGATTTCCATTGATGAGATTAAGCAATGTTCTTGGTTTAGGAAGTGGCCAAATGGTATACAGACAACACAAGAAGGGGAAAACAGGAGTGTCTCTCCTTCAATTACACATCATTCTGAACAATATGGTGATGGAAGTAATGGCTTAGCAGCAGAAGCAAGGCAAGAGTCAGTTGTGCCAGTAAGTATAAATGCCTTTGATATAATCTCCCTCTCACCTGGGTTTAATCTTTGTGGATTCTTTGAAGACAGCTTTCAGAAAAGGGAAGCAAGATTTACTTCAAGACAACCAGCATCTCTCATCATCTTCAGGCTGCAAGAAATTGCAAATCGGCTGAAGATGAAAATAAAGAAAAGGGCTGCCGGTTTGTTGAAATTGGAGAGCCTTCATGAAGGTAGGAAGGGGATCTTATCCATTGATGCAGAAATCTTTGAGGTTACTCCACTTCTGCACTTGGTGGAGGTGAAGAAATCAAATGGAGATACGCTTGAATATGAGAAAATACTGAAAGAAGCCATAAGGCCTGCTCTTAAAGATATTGTTTGGGTATGGCAAGGTGACCAACAACAGTAA	1341	0.4034	MSSRENKSNILMQKYELGRLLGKGTFGKVYYGRSTITNQGVAIKVIDKNKVIKAGQVDHVKREISIMRLVKHPNVIELFEVMATKSKIYFVMEYAKGGELFKKVAKGKLKEDVAHKYFIQLVNAVDFCHSRGVCHRDIKPENILLDENDNLKISDFGLSALAESKHQDGLLHTACGTPAYVAPEVIKRKGYDGAKADIWSCGVVLFVLLAGYIPFQDPNLMVMYRKISKAEFTCPRWLPRGVRRLLSKMLDPNPNTRISIDEIKQCSWFRKWPNGIQTTQEGENRSVSPSITHHSEQYGDGSNGLAAEARQESVVPVSINAFDIISLSPGFNLCGFFEDSFQKREARFTSRQPASLIIFRLQEIANRLKMKIKKRAAGLLKLESLHEGRKGILSIDAEIFEVTPLLHLVEVKKSNGDTLEYEKILKEAIRPALKDIVWVWQGDQQQ	446

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium3883g00004	446	ProSiteProfiles	NAF domain profile.	314	338	IPR018451	GO:0007165
	Vium3883g00004	446	Gene3D	Kinase associated domain 1, KA1	317	439	-	-
	Vium3883g00004	446	CDD	STKc_SnRK3	14	268	-	-
	Vium3883g00004	446	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	133	145	IPR008271	GO:0004672\|GO:0006468
	Vium3883g00004	446	SUPERFAMILY	Protein kinase-like (PK-like)	11	295	IPR011009	-
	Vium3883g00004	446	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	5	434	-	-
	Vium3883g00004	446	FunFam	Non-specific serine/threonine protein kinase	314	438	-	-
	Vium3883g00004	446	MobiDBLite	consensus disorder prediction	279	299	-	-
	Vium3883g00004	446	ProSitePatterns	Protein kinases ATP-binding region signature.	21	44	IPR017441	GO:0005524
	Vium3883g00004	446	SMART	serkin_6	15	269	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium3883g00004	446	Pfam	NAF domain	316	374	IPR004041	GO:0007165
	Vium3883g00004	446	MobiDBLite	consensus disorder prediction	279	303	-	-
	Vium3883g00004	446	CDD	CIPK_C	320	434	-	-
	Vium3883g00004	446	FunFam	Non-specific serine/threonine protein kinase	6	94	-	-
	Vium3883g00004	446	ProSiteProfiles	Protein kinase domain profile.	15	269	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium3883g00004	446	Pfam	Protein kinase domain	15	269	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium3883g00004	446	Gene3D	Transferase(Phosphotransferase) domain 1	5	316	-	-
	Vium3883g00004	446	FunFam	Non-specific serine/threonine protein kinase	5	293	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium3883g00004	Vium-Chr3883	64229	66677	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium3883g00004	5	446	CBL-interacting serine-threonine protein kinases	AT5G58380	65.121	0.0	605

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Vium3883g00004		Pkinase	1.4e-75	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium3883g00004	-		K07198	gmx:100779316	775.778