Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3883g00003 ATGTCTTCTAGGGAGAACAAATCAAACATCTTGATGCAAAAATATGAACTAGGAAGGTTACTAGGTAAAGGAACGTTTGGAAAGGTTTACTATGGCCGTAGTACAATAACTAACCAAGGTGTGGCCATTAAAGTGATTGACAAGAATAAGGTTATAAAAGCTGGGCAGGTTGATCACGTTAAAAGGGAAATATCTATTATGAGACTGGTGAAGCACCCAAATGTTATTGAGCTTTTTGAGGTCATGGCCACAAAGAGTAAGATTTACTTTGTTATGGAATATGCTAAAGGTGGGGAACTGTTTAAGAAGGTGGCCAAAGGAAAGCTCAAAGAAGATGTTGCACACAAATATTTTATTCAGCTAGTGAATGCAGTGGATTTTTGTCACAGTAGAGGTGTATGCCATAGAGATATAAAGCCAGAGAACATTCTGTTGGATGAAAATGATAATCTGAAGATCTCAGATTTCGGGTTAAGTGCCCTGGCTGAATCCAAACACCAAGATGGCTTGTTGCACACAGCTTGTGGAACACCTGCCTATGTTGCTCCTGAGGTCATCAAAAGGAAAGGTTATGATGGTGCAAAAGCTGATATTTGGTCATGTGGGGTAGTTTTGTTTGTCTTACTAGCAGGTTACATCCCTTTCCAAGATCCTAATTTGATGGTGATGTATAGGAAGATAAGCAAGGCAGAGTTTACATGTCCTAGATGGCTCCCAAGAGGAGTTCGGAGGCTATTGAGCAAGATGTTGGATCCAAATCCAAACACTAGGATTTCCATTGATGAGATTAAGCAATGTTCTTGGTTTAGGAAGTGGCCAAATGGTATACAGACAACACAAGAAGGGGAAAACAGGAGTGTCTCTCCTTCAATTACACATCATTCTGAACAATATGGTGATGGAAGTAATGGCTTAGCAGCAGAAGCAAGGCAAGAGTCAGTTGTGCCACTTTCAGAAAAGGGAAGCAAGATTTACTTCAAGACAACCAGCATCTCTCATCATCTTCAGGCTGCAAGAAATTGCAAATCGGCTGAAGATGAAAATAAAGAAAAGGGCTGCCGGTTTGTTGAAATTGGAGAGCCTTCATGA 1089 0.405 MSSRENKSNILMQKYELGRLLGKGTFGKVYYGRSTITNQGVAIKVIDKNKVIKAGQVDHVKREISIMRLVKHPNVIELFEVMATKSKIYFVMEYAKGGELFKKVAKGKLKEDVAHKYFIQLVNAVDFCHSRGVCHRDIKPENILLDENDNLKISDFGLSALAESKHQDGLLHTACGTPAYVAPEVIKRKGYDGAKADIWSCGVVLFVLLAGYIPFQDPNLMVMYRKISKAEFTCPRWLPRGVRRLLSKMLDPNPNTRISIDEIKQCSWFRKWPNGIQTTQEGENRSVSPSITHHSEQYGDGSNGLAAEARQESVVPLSEKGSKIYFKTTSISHHLQAARNCKSAEDENKEKGCRFVEIGEPS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3883g00003 362 CDD STKc_SnRK3 14 268 - -
Vium3883g00003 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Vium3883g00003 362 MobiDBLite consensus disorder prediction 279 299 - -
Vium3883g00003 362 FunFam Non-specific serine/threonine protein kinase 5 294 - -
Vium3883g00003 362 Pfam Protein kinase domain 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3883g00003 362 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Vium3883g00003 362 SMART serkin_6 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3883g00003 362 SUPERFAMILY Protein kinase-like (PK-like) 11 294 IPR011009 -
Vium3883g00003 362 MobiDBLite consensus disorder prediction 279 303 - -
Vium3883g00003 362 ProSiteProfiles Protein kinase domain profile. 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3883g00003 362 FunFam Non-specific serine/threonine protein kinase 6 94 - -
Vium3883g00003 362 Gene3D Transferase(Phosphotransferase) domain 1 5 351 - -
Vium3883g00003 362 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 5 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3883g00003 Vium-Chr3883 64229 66678 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3883g00003 5 304 CBL-interacting serine-threonine protein kinases AT5G58380 68.000 9.27e-152 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vium3883g00003 Pkinase 7.8e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3883g00003 - K07198 gmx:100779316 546.199