Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium3883g00003 | ATGTCTTCTAGGGAGAACAAATCAAACATCTTGATGCAAAAATATGAACTAGGAAGGTTACTAGGTAAAGGAACGTTTGGAAAGGTTTACTATGGCCGTAGTACAATAACTAACCAAGGTGTGGCCATTAAAGTGATTGACAAGAATAAGGTTATAAAAGCTGGGCAGGTTGATCACGTTAAAAGGGAAATATCTATTATGAGACTGGTGAAGCACCCAAATGTTATTGAGCTTTTTGAGGTCATGGCCACAAAGAGTAAGATTTACTTTGTTATGGAATATGCTAAAGGTGGGGAACTGTTTAAGAAGGTGGCCAAAGGAAAGCTCAAAGAAGATGTTGCACACAAATATTTTATTCAGCTAGTGAATGCAGTGGATTTTTGTCACAGTAGAGGTGTATGCCATAGAGATATAAAGCCAGAGAACATTCTGTTGGATGAAAATGATAATCTGAAGATCTCAGATTTCGGGTTAAGTGCCCTGGCTGAATCCAAACACCAAGATGGCTTGTTGCACACAGCTTGTGGAACACCTGCCTATGTTGCTCCTGAGGTCATCAAAAGGAAAGGTTATGATGGTGCAAAAGCTGATATTTGGTCATGTGGGGTAGTTTTGTTTGTCTTACTAGCAGGTTACATCCCTTTCCAAGATCCTAATTTGATGGTGATGTATAGGAAGATAAGCAAGGCAGAGTTTACATGTCCTAGATGGCTCCCAAGAGGAGTTCGGAGGCTATTGAGCAAGATGTTGGATCCAAATCCAAACACTAGGATTTCCATTGATGAGATTAAGCAATGTTCTTGGTTTAGGAAGTGGCCAAATGGTATACAGACAACACAAGAAGGGGAAAACAGGAGTGTCTCTCCTTCAATTACACATCATTCTGAACAATATGGTGATGGAAGTAATGGCTTAGCAGCAGAAGCAAGGCAAGAGTCAGTTGTGCCACTTTCAGAAAAGGGAAGCAAGATTTACTTCAAGACAACCAGCATCTCTCATCATCTTCAGGCTGCAAGAAATTGCAAATCGGCTGAAGATGAAAATAAAGAAAAGGGCTGCCGGTTTGTTGAAATTGGAGAGCCTTCATGA | 1089 | 0.405 | MSSRENKSNILMQKYELGRLLGKGTFGKVYYGRSTITNQGVAIKVIDKNKVIKAGQVDHVKREISIMRLVKHPNVIELFEVMATKSKIYFVMEYAKGGELFKKVAKGKLKEDVAHKYFIQLVNAVDFCHSRGVCHRDIKPENILLDENDNLKISDFGLSALAESKHQDGLLHTACGTPAYVAPEVIKRKGYDGAKADIWSCGVVLFVLLAGYIPFQDPNLMVMYRKISKAEFTCPRWLPRGVRRLLSKMLDPNPNTRISIDEIKQCSWFRKWPNGIQTTQEGENRSVSPSITHHSEQYGDGSNGLAAEARQESVVPLSEKGSKIYFKTTSISHHLQAARNCKSAEDENKEKGCRFVEIGEPS | 362 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium3883g00003 | 362 | CDD | STKc_SnRK3 | 14 | 268 | - | - | |
Vium3883g00003 | 362 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 133 | 145 | IPR008271 | GO:0004672|GO:0006468 | |
Vium3883g00003 | 362 | MobiDBLite | consensus disorder prediction | 279 | 299 | - | - | |
Vium3883g00003 | 362 | FunFam | Non-specific serine/threonine protein kinase | 5 | 294 | - | - | |
Vium3883g00003 | 362 | Pfam | Protein kinase domain | 15 | 269 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vium3883g00003 | 362 | ProSitePatterns | Protein kinases ATP-binding region signature. | 21 | 44 | IPR017441 | GO:0005524 | |
Vium3883g00003 | 362 | SMART | serkin_6 | 15 | 269 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vium3883g00003 | 362 | SUPERFAMILY | Protein kinase-like (PK-like) | 11 | 294 | IPR011009 | - | |
Vium3883g00003 | 362 | MobiDBLite | consensus disorder prediction | 279 | 303 | - | - | |
Vium3883g00003 | 362 | ProSiteProfiles | Protein kinase domain profile. | 15 | 269 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vium3883g00003 | 362 | FunFam | Non-specific serine/threonine protein kinase | 6 | 94 | - | - | |
Vium3883g00003 | 362 | Gene3D | Transferase(Phosphotransferase) domain 1 | 5 | 351 | - | - | |
Vium3883g00003 | 362 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 5 | 300 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium3883g00003 | Vium-Chr3883 | 64229 | 66678 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium3883g00003 | 5 | 304 | CBL-interacting serine-threonine protein kinases | AT5G58380 | 68.000 | 9.27e-152 | 434 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | CAMK_CAMKL-CHK1 | Vium3883g00003 | Pkinase | 7.8e-76 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium3883g00003 | - | K07198 | gmx:100779316 | 546.199 |