Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3883g00001 ATGCCGGAAATTGAACAGGCGGCGGCGGCGGCGGAGAGCACCGTTTTGTTTGAAAAATACGAGGTGGGAAGGCTCCTAGGATGCGGCGCGTTCGCGAAGGTGTACCACGCGCGTAACACCAGCACGGGGCAAAGCGTGGCAGTGAAAGTGGTAAGCAAGAAGAAACTAGCCGCAATGGGGATGGCCTCCAACGTGAAGCGCGAGATTACCATCATGAGCCGTCTTCACCACCCCAACATCGTGAAACTCCACGAAGTGTTGGCGACAAAGACAAAAATCTACTTCATCTTGGAATTCGCGAAAGGAGGCGAGCTCTTCGCGAGAATCGCGAAGAGTCGATTCGGCGAAGATCTCGCGCGACGGTTTTTCCAGCAGTTGATCTCTGCCGTCGGGTACTGCCATGCGCGGGGCGTTTTCCACCGCGACTTGAAGCCGGAGAATCTTCTGCTGGACGAGCATGCGAACCTCAAAGTCTCCGACTTTGGACTCGGCGCGGTGAAGGAGCAGATGGGGGTGGATGGGGTGCTGTACACGCTATGTGGGACCCCTGCTTACGTGGCACCGGAGATTTTGGCGAAGAAGGGTTACGACGGGGCTAAAGTTGATGTTTGGTCTTGTGGGGTTATTCTCTTTGTTCTTGTGGCTGGGTATCTACCGTTTAATGACCCGAATCTTATGGTGATGTACAGGAAGATTTACAAGGGGGAGTATCGATGTCCGAGGTGGTTTTCGACGGAGTTAAGGAGGTTTCTGGCGAGGTTGTTGGATACGAATCCCGAGACGAGGATAACCGTCGATGAGATTTTGAAGGAGGCGTGGTTCAAAAAGGGGTACAAGGAGGTTACATTTGGCGATTTAGGTTTGGAGTGGAAGAGTGAAGGTGATGATGTGAAGGATTTGAACGCGTTTGATATCATTGCTTTCTCCACAGGCTTGAATCTCTCCGGTTTGTTTGATTCATTGAAGGAGGTGGAAGAGGGAGAGAGGTTTCTGCTTAAGGAGTCGCCGGAGAAGGTGGTGGAGAAGGTAGTTGCGGCGGCGTCTACTGTGGAGGGTATTATCGTGCGGAGGAGGAAGGAGTGTGGGGTGGAGTTGGAGGGGTGTGATGGTAATTTCGCCGCTTTGGTGGAGGTTTACCGGTTATCGGCGGAACTGGTTGTGGTTGAGGTGAGAAGGAGGGATGGAAATGGCGGAGTTTTCAGGGATGTGTGGAGGAATAAGATTAGGCCGTATCTATGTGCTGCAAGTAGCAGTACGACGTCGGATCGGGAGGAAACCGGTGCGCAGCCGGTTGCCGGTGAATCATGA 1308 0.5313 MPEIEQAAAAAESTVLFEKYEVGRLLGCGAFAKVYHARNTSTGQSVAVKVVSKKKLAAMGMASNVKREITIMSRLHHPNIVKLHEVLATKTKIYFILEFAKGGELFARIAKSRFGEDLARRFFQQLISAVGYCHARGVFHRDLKPENLLLDEHANLKVSDFGLGAVKEQMGVDGVLYTLCGTPAYVAPEILAKKGYDGAKVDVWSCGVILFVLVAGYLPFNDPNLMVMYRKIYKGEYRCPRWFSTELRRFLARLLDTNPETRITVDEILKEAWFKKGYKEVTFGDLGLEWKSEGDDVKDLNAFDIIAFSTGLNLSGLFDSLKEVEEGERFLLKESPEKVVEKVVAAASTVEGIIVRRRKECGVELEGCDGNFAALVEVYRLSAELVVVEVRRRDGNGGVFRDVWRNKIRPYLCAASSSTTSDREETGAQPVAGES 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3883g00001 435 CDD CIPK_C 301 413 - -
Vium3883g00001 435 Gene3D Kinase associated domain 1, KA1 299 415 - -
Vium3883g00001 435 ProSiteProfiles Protein kinase domain profile. 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3883g00001 435 SUPERFAMILY Protein kinase-like (PK-like) 16 281 IPR011009 -
Vium3883g00001 435 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 13 393 - -
Vium3883g00001 435 Pfam NAF domain 299 349 IPR004041 GO:0007165
Vium3883g00001 435 FunFam Non-specific serine/threonine protein kinase 10 304 - -
Vium3883g00001 435 FunFam Non-specific serine/threonine protein kinase 11 99 - -
Vium3883g00001 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Vium3883g00001 435 Pfam Protein kinase domain 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3883g00001 435 Gene3D Transferase(Phosphotransferase) domain 1 10 298 - -
Vium3883g00001 435 ProSiteProfiles NAF domain profile. 295 319 IPR018451 GO:0007165
Vium3883g00001 435 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Vium3883g00001 435 SMART serkin_6 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3883g00001 Vium-Chr3883 33826 44845 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3883g00001 1 421 CBL-interacting serine-threonine protein kinases AT2G30360 60.599 0.0 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vium3883g00001 Pkinase 8.1e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3883g00001 - - gmx:100815088 723.005