Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium387g00005 ATGTCTTCGTTCTCAAATCAGGATCAAAGTAATGATAATCAGTCACAGGAAAATAATCTAAGGAAAGGGCCATGGACCGCAGAAGAAGATGCAATACTGGCAGAATATGTGACAAAACACGGACCAGGAAATTGGAACATAGTGCAGCAAAACACTGGACTACTTCGTTGTGGGAAAAGTTGTCGTTTAAGGTGGACAAATCATCTAAGACCAGATCTAAGGAGAGGTGCATTCAGCAAAGAAGAACAAAGCAAAGTCATTCAGTTACATGCGGTGATGGGAAATAAATGGGCTAAAATGGCACAGGAGTTGCCTGGACGAACAGACAATGAAATCAAGAACTTTTGGAACACTAGACTGAAGAAAAAGAAACGAGTTAGCTTAGAACTCCACCCAGATGGCATAAAACCTGTGCTTGATGCCCACAACCCAAACACTACTCTAGCTACCTACACTCATCGTGACGAAGTAGTAGGGACATCATCTCAACATGCCATGTTAAATAATTTCCTTAACACTCAAAATCAACCACTCCCTGTACAACCAGTTTCTATGGTACGTGAAAACATGAAACCACCTCAAGAAATGCAACCGTCTGAAATACCTCGGCAACTACAACTACCTGAAGCAGGTAGATCATCTTATGTACCATATCTGGTGTTCAACAATTCCAGTGACACTCCAAATCAACCACTGCAACCAAATTCTATGGTACGTGGAAACATGAAACCGTCTGGCATACCTCAAGGAATGCAACTGTCTGAGGTGCCTGAAGAACTACAACGACAAGGTACATCATCATCTTATGTACCACATGTGGTGTTCAACAATTATAGTAACGCTCCAAATGAACCACTGTGTGTACAAGCAATTTCTATGGTACGTGAAAACATGGAACCGTCTGGCATACCTCAAGAAATGCAACTGTCTGAGGTACCTGAGGAACTACAACTATCTGAAGCAGATTTTGATGCGTTACAGGGAGATTTCGCGAATGATGACTATGCATGTTTAGATGGCCTTTCTTCTACATCAGAGTTGCCTCCATTGCCATCATGTCATGACTTAACATTTGAAGAGTCAATGATAATGAGAGAGAATTCTCAGGCTGAGACTAACCAGTATTATGTGCCACGCTCTCCACGTAGCAATGGGTATTTGGAGTCTATCTTTTATCCACCAAAGGTTTCGCAAGAACAAGATGATTTTTCCATGCAAGGGGAGTTGAATATGAGAAATGCCACAGAAATTTCCTACCAGAGAAAACCTGAAAATGAAGAAGTTTTGGGTGACTTGATTTGGCCAGAGAATCAACATGATGATGCTTTATATGGCTATCGTTCTTTTTTGAAACCTTAA 1359 0.4121 MSSFSNQDQSNDNQSQENNLRKGPWTAEEDAILAEYVTKHGPGNWNIVQQNTGLLRCGKSCRLRWTNHLRPDLRRGAFSKEEQSKVIQLHAVMGNKWAKMAQELPGRTDNEIKNFWNTRLKKKKRVSLELHPDGIKPVLDAHNPNTTLATYTHRDEVVGTSSQHAMLNNFLNTQNQPLPVQPVSMVRENMKPPQEMQPSEIPRQLQLPEAGRSSYVPYLVFNNSSDTPNQPLQPNSMVRGNMKPSGIPQGMQLSEVPEELQRQGTSSSYVPHVVFNNYSNAPNEPLCVQAISMVRENMEPSGIPQEMQLSEVPEELQLSEADFDALQGDFANDDYACLDGLSSTSELPPLPSCHDLTFEESMIMRENSQAETNQYYVPRSPRSNGYLESIFYPPKVSQEQDDFSMQGELNMRNATEISYQRKPENEEVLGDLIWPENQHDDALYGYRSFLKP 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium387g00005 452 CDD SANT 77 120 IPR001005 -
Vium387g00005 452 SUPERFAMILY Homeodomain-like 19 116 IPR009057 -
Vium387g00005 452 MobiDBLite consensus disorder prediction 1 22 - -
Vium387g00005 452 CDD SANT 24 69 IPR001005 -
Vium387g00005 452 FunFam MYB-related transcription factor 21 74 - -
Vium387g00005 452 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 6 415 - -
Vium387g00005 452 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Vium387g00005 452 Gene3D - 22 74 - -
Vium387g00005 452 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Vium387g00005 452 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Vium387g00005 452 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Vium387g00005 452 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Vium387g00005 452 SMART sant 74 122 IPR001005 -
Vium387g00005 452 SMART sant 21 71 IPR001005 -
Vium387g00005 452 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Vium387g00005 452 MobiDBLite consensus disorder prediction 1 23 - -
Vium387g00005 452 Gene3D - 77 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium387g00005 Vium-Chr387 37786 39342 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium387g00005 1 166 MYB Transcription Factor Family AT2G26960 53.614 7.53e-58 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium387g00005 Myb_DNA-bind_6 7.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium387g00005 K09422 - vra:106763259 424.476