Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium387g00004 ATGAGGAAAAAACTGGATACTCGTTTCCCTGCGGCCAGGATTAAGAAAATTATGCAAGCTGATGAGGATGTAGGGAAGATTGCAATGGCTGTGCCTCTTTTAGTTTCTAAAGCACTTGAGCTATTTCTACAAGATTTGTGTGATCGAACATATGAGATAACTCTGAGGAGGGGAGCTAAGACTATGAATGCTTTTCATTTAAAACAGTGTGTGCAGACTTTTAACGTCTTTGACTTTCTGAAAGATATTGTCAGCAAGGTTCCTGATTTAGGCGGTTCTGTAGCAAATTGCGATGACCATACTGTCAAGAGGAGGAAAGTTGCTGAAGATGATAATGATAGCCACCAGGAGCCCAAGAGAAATAACAAGGCGGAGCAGGGACAAACCAGTGGCAGAGGAAGGGGTAGGGGCAGAGGAAGGGGTCGTGGCCGTGGAAATAGAAATGTAGATCAAGAGATGAATTCACAAGCCAAGTGTGCAGAAGATTCTGATGCATTGAAGCAAAATGAAAAGCAGACTCAAAGCAATGAAAGCATGGAAAACGCGTCATCACCTGAAGAAGTTAAGCAGACTTTTCCAGTTAGCAAGCCGGCTCAGGTGTCCATTCGAAATTTTGACTTAAACATGGACCCAGATGAGAATATGGAATCGTTAACATCACCAACTGCTGTTCCAACTAGTTCATCAGCAAAATCAGAAGAGAAACATCATGAGGAATATCCTGGATGGTCCTTGTCTGATATGGAAAAAATGACCATTGATCCCATTCAACTAGCTAACATAAATGGAAGGATTGATGAAGATGAAGAGGATTATGATGAAGAAATGTAA 831 0.4164 MRKKLDTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLRRGAKTMNAFHLKQCVQTFNVFDFLKDIVSKVPDLGGSVANCDDHTVKRRKVAEDDNDSHQEPKRNNKAEQGQTSGRGRGRGRGRGRGRGNRNVDQEMNSQAKCAEDSDALKQNEKQTQSNESMENASSPEEVKQTFPVSKPAQVSIRNFDLNMDPDENMESLTSPTAVPTSSSAKSEEKHHEEYPGWSLSDMEKMTIDPIQLANINGRIDEDEEDYDEEM 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium387g00004 276 MobiDBLite consensus disorder prediction 148 162 - -
Vium387g00004 276 MobiDBLite consensus disorder prediction 169 196 - -
Vium387g00004 276 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 158 - -
Vium387g00004 276 MobiDBLite consensus disorder prediction 230 244 - -
Vium387g00004 276 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Vium387g00004 276 FunFam dr1-associated corepressor homolog 1 86 - -
Vium387g00004 276 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Vium387g00004 276 SUPERFAMILY Histone-fold 4 88 IPR009072 GO:0046982
Vium387g00004 276 MobiDBLite consensus disorder prediction 213 229 - -
Vium387g00004 276 MobiDBLite consensus disorder prediction 208 248 - -
Vium387g00004 276 MobiDBLite consensus disorder prediction 102 122 - -
Vium387g00004 276 MobiDBLite consensus disorder prediction 102 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium387g00004 Vium-Chr387 32492 36289 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium387g00004 1 265 CCAAT-HAP5 Transcription Factor Family AT3G12480 46.735 1.11e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vium387g00004 CBFD_NFYB_HMF 2.1e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium387g00004 K21752 - gmx:100814800 398.282