Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3879g00001 ATGCCAGCAAGAAAACCTGCATTGTTTTTGGCAAAGAATGCTGTTCTGACTTCCTTTGCATCAGGGCGTGCTACATCATTGGTTGTTGATGGTGGTGGAGGGTCAACTACAATTGCACCAGTACACGATGGTTATGTTATTCAGAAGGCTGTGGCAACTTCCCCCTTGGAGGAGAATTTCTTAACAGATTGCTTGATGAAAAGCTTGGAAAGCAAGGGTATTACGATGAAACCACGTTATTCCTTTAGGAGAAAGGAAATACGCCCTGGAGAGTTTCAGGTATAATACGGTAATCTTGATTTTCGCAATACAACTGAAAGCTACAAACTCTATTCACAGAGGGTGATTGCTAGTGATGTCAAGGAATGTGTGTGCCGTGCTCCAGATACTCCTTACGATGAGAGTGCATATTCAAACATCCCAATGACCTCGTATGAGCTTCCTGATGGCCAGACAATTGAAATTGGAGCTGACAGATTTAAGATTCCAGATGTTCTTTTCAACCCGTCACTGGTTCAGGTGTGTGGCTTGCATGCATGGATGTGA 546 0.4359 MPARKPALFLAKNAVLTSFASGRATSLVVDGGGGSTTIAPVHDGYVIQKAVATSPLEENFLTDCLMKSLESKGITMKPRYSFRRKEIRPGEFQVXYGNLDFRNTTESYKLYSQRVIASDVKECVCRAPDTPYDESAYSNIPMTSYELPDGQTIEIGADRFKIPDVLFNPSLVQVCGLHAWM 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3879g00001 181 PANTHER ACTIN 6 178 IPR004000 -
Vium3879g00001 181 CDD NBD_sugar-kinase_HSP70_actin 3 52 - -
Vium3879g00001 181 Gene3D Actin; Chain A, domain 4 56 82 - -
Vium3879g00001 181 Gene3D - 14 55 - -
Vium3879g00001 181 Pfam Actin 6 173 IPR004000 -
Vium3879g00001 181 Gene3D Actin; Chain A, domain 4 99 177 - -
Vium3879g00001 181 SUPERFAMILY Actin-like ATPase domain 22 174 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3879g00001 Vium-Chr3879 434 6273 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3879g00001 6 178 Cytoskeleton Gene Families AT3G12110 34.286 1.48e-23 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3879g00001 K11340 - vum:124835977 365.925