Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3878g00005 ATGGGGGATGCTACGATAGATAAGACTCGTGATTTCAACATGGCTTCAAGAAAAGCTGAAGAGGCGGCTTGCAGACGCTATAAGGCAACTCAATGGCTAGAAAGCCAAGTGGGTCCTCTTGGTCTACCGAGCCAACCTACAGAGAGAGAACTCATTTCTTGCTTGAGAAATGGTCTGATTCTTTGCAATGCCATTAACAAGATTCATCCAGGAGCAGTGCCTAAAGTTGTGGTTGTGGATAATCAAATGCCTTCACAATCACTTACCTGGGATTCTCAGCCATTGCCCGCCTATCAGTATTTTGTAAATTTACGCAACTTTCTTGTTGCAATGGAGGAATTAAATCTTCCGGCTTTTGAAGCTTCTGATCTTGAAAGGGATACACTGGAGATGGGATCAGCAGCCAAAGTGGTCGATTGCATTTTGGCACTTAAATCGTTTCAGGAGTTGAAGCAGATGAACAATCAGAATGGATACAACAAATGCATAAAATCTCCTTTACCTATGAGACTGCATTCAAGAGCTGCAGCTGCACTACCCTCTGATGCTTGTAGGCAATTGGATTTGACTGCCACAATGGAAAAGATGCCTCCGGCTGACAGTAATTTTTCGAATAGAGAAGAAATTGTGGAATTACTTGCCAAGCAACTGGTTGACCGTATGTTAGATGCCAAAGAAAATATTGATGGAAACATCATTGCTTCTCTCCGTAAAGAACACCTGGTAGAGGATCCAATAAAGGTTTTTAATCAGATAATGGCATGTTGTAATGGGGAACAGCCAACTACAAGGTTGCGTGAGGATTTTGTTAAAGAAGAGGGGTTATCACTTCATTCCACATCTACACAATCAGCTGCTTTATCTGCTCCTGACAATTCTAAGCGTTGCCAAGCATGTCCCGGAAAATGCAAGTGCAACCAGGAACATCTTTTAAACATGCAGGAAAAAGAACTTGTGGATCTCAAGGCTTTGAAGTTGAAAATTAAGAAAGAGTTTGAAGAGATGCAGTCACAGTTTCAAGGATTTTTTTATGACATTGGAAGTCAAATACAGGAGATGTCAACTAAAGCTATAGGATATCACAGAGTAGTAGAAGAGAATAGGAAACTATACAATATGGTCCAAGATTTGAAAGGTAATATTCGAGTTTACTGCAGAATCAGGCCATCATTCCGGGCTGAATCAAGGAATATTGTTGATTTCATCGGGGAAGATGGTTCTCTATTCATTTTAGATCCATCAAAAACACTGAAAGATGGAAGGAAACTTTTTCAGTTTAATCGTGTTTTTGGTCCAACAGCTGGCCAAGATGAGGTTTACAAAGATACTCAACCATTGATTAGATCTGTGATGGATGGATACAATGTTTGTATTTTTGCTTATGGTCAAACTGGATCTGGGAAGACTCACACCATGAGTGGTCCATCAAGTGGAACATTTAAGGATATGGGAATCAATTATCTGGCTCTTAAAGATCTGTTTCAAATGTCTAATGAAAGGAATGACATCATAAGTTATGACATTTATGTTCAAATGGTTGAGATTTACAATGAACAAGTTAGAGATCTACTTGCAGAAGACAAAACTGACAACAAATTAGAAATCCGGAGCTGCAATGATGACGGATTGAGCCTTCCAGATGCTAAATTGCGCCCTGTGAAGTCTACAACTGATGTTATGACCCTCATGAAACTTGGTGAGGTTAATCGCTCTGTCAGTTCGACTGCAATGAACAACAGGAGTAGTCGTTCTCACAGTGTACTTACTGTGCATGTTCATGGCAAAGATACATCTGGGAACTCCATTCGCAGTTGCTTGCACTTGGTAGACCTAGCTGGAAGTGAACGAGTAGACAAGTCTGAAGTTACAGGGGATAGACTAAAGGAAGCACAATTTATTAACAAATCTCTTTCCTGTTTGGGAGATGTGATCACAGCCCTGGCTCAAAAGAATTCTCACATACCTTACAGGAACAGCAAACTCACTCTTCTTTTGCAAGATTCCTTAGGTGGACATGCAAAAACATTGATGTTTGCTCATGTGAGTCCGGAAGCAGATTCCTTTGGTGAAACAGTGAGTACTTTAAAGTTTGCTCAGAGGGTTTCCACTGTGGAACTGGGGGCAGCCCGTTTGAACAAAGAAAGCAGTGAGGTTATGCAACTTAAAGAACAGGTTGAGAACCTTAAGATTGCATTGGCAACCAAGGACGCTCAGAGAATGTTCCAAAGGAATAGAGAGCCATACACTCCATCAGAGAAAACTCCATTGCCCTCTCGGAGACTTAGCATTGAGAACTGCCCCGATAAATCTGTGAGTCGAGAGGATAAAAGTGGAGTTAAATCACCACTTTTGTTACCTCGTTCCAGAAGATTAAGTTTGGAAGGTCCAAAATCTATCAAGAAAGATGGTCTACAGTATGAGCCTGTATCTATGCAGAAATATCGCCCAATGCAGGATGTAGAGGCCGTGTCCAAACTAAATGGCCAGTTCAGCAGTGGCAATTCCAAGTCAGAGTTGCATGCCAAAACCCCTCGAAGTCCTACAAGCATTTCCTATCAAACGAGATTGATAAAATTAAATGATGGCATGCAAGTTCATCCTATTAAACTGCCTCAAACACCTGAACCACCTGTTCGGGATGGAAATGATGCACATGCCTATAAGGTGATGGGTAGCACAAATGGCAAAGGATCCCAAATAAGAAGATCCTTGAGAACAATTGGGAAACTGATCAATGGCCCTGATAAGAGGAGCCAACAAGTTGAAGTGAAGTCACCCATCAAGGGTACTGGCCATAGAAATAATGTAAAATCACCCATCAGGGGCACTGGCTATACAAATAATGTAAAATCACCAATTTCAGCTGTTGAGAAAACGAAGAGAAGACAATCTCTAACAGGGATTCAAGCACCACTGCCAAACAACTCACGTAGATCTTCACTTGGAGGAAAGCCAGTAGCAGCATACGACGACAAGGAGAGAAATGCTAGAACTCCTCCTCCAAATCCTCATTCAGACACCAAGACTTCAAAACGGTGGCTGTAG 3045 0.4154 MGDATIDKTRDFNMASRKAEEAACRRYKATQWLESQVGPLGLPSQPTERELISCLRNGLILCNAINKIHPGAVPKVVVVDNQMPSQSLTWDSQPLPAYQYFVNLRNFLVAMEELNLPAFEASDLERDTLEMGSAAKVVDCILALKSFQELKQMNNQNGYNKCIKSPLPMRLHSRAAAALPSDACRQLDLTATMEKMPPADSNFSNREEIVELLAKQLVDRMLDAKENIDGNIIASLRKEHLVEDPIKVFNQIMACCNGEQPTTRLREDFVKEEGLSLHSTSTQSAALSAPDNSKRCQACPGKCKCNQEHLLNMQEKELVDLKALKLKIKKEFEEMQSQFQGFFYDIGSQIQEMSTKAIGYHRVVEENRKLYNMVQDLKGNIRVYCRIRPSFRAESRNIVDFIGEDGSLFILDPSKTLKDGRKLFQFNRVFGPTAGQDEVYKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMSGPSSGTFKDMGINYLALKDLFQMSNERNDIISYDIYVQMVEIYNEQVRDLLAEDKTDNKLEIRSCNDDGLSLPDAKLRPVKSTTDVMTLMKLGEVNRSVSSTAMNNRSSRSHSVLTVHVHGKDTSGNSIRSCLHLVDLAGSERVDKSEVTGDRLKEAQFINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGHAKTLMFAHVSPEADSFGETVSTLKFAQRVSTVELGAARLNKESSEVMQLKEQVENLKIALATKDAQRMFQRNREPYTPSEKTPLPSRRLSIENCPDKSVSREDKSGVKSPLLLPRSRRLSLEGPKSIKKDGLQYEPVSMQKYRPMQDVEAVSKLNGQFSSGNSKSELHAKTPRSPTSISYQTRLIKLNDGMQVHPIKLPQTPEPPVRDGNDAHAYKVMGSTNGKGSQIRRSLRTIGKLINGPDKRSQQVEVKSPIKGTGHRNNVKSPIRGTGYTNNVKSPISAVEKTKRRQSLTGIQAPLPNNSRRSSLGGKPVAAYDDKERNARTPPPNPHSDTKTSKRWL 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3878g00005 1014 ProSiteProfiles Calponin homology (CH) domain profile. 23 149 IPR001715 GO:0005515
Vium3878g00005 1014 SMART kinesin_4 378 712 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium3878g00005 1014 PRINTS Kinesin heavy chain signature 575 592 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium3878g00005 1014 PRINTS Kinesin heavy chain signature 605 623 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium3878g00005 1014 PRINTS Kinesin heavy chain signature 453 474 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium3878g00005 1014 PRINTS Kinesin heavy chain signature 654 675 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium3878g00005 1014 Gene3D - 8 164 IPR036872 -
Vium3878g00005 1014 Coils Coil 708 738 - -
Vium3878g00005 1014 CDD CH_AtKIN14-like 25 146 - -
Vium3878g00005 1014 PANTHER KINESIN-LIKE PROTEIN KLP-3 30 883 IPR027640 GO:0003777|GO:0007018
Vium3878g00005 1014 MobiDBLite consensus disorder prediction 915 1014 - -
Vium3878g00005 1014 Gene3D Kinesin motor domain 322 706 IPR036961 -
Vium3878g00005 1014 MobiDBLite consensus disorder prediction 936 981 - -
Vium3878g00005 1014 Pfam Calponin homology (CH) domain 24 146 IPR001715 GO:0005515
Vium3878g00005 1014 FunFam Kinesin-like protein KIN-14L 11 176 - -
Vium3878g00005 1014 ProSiteProfiles Kinesin motor domain profile. 380 704 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium3878g00005 1014 Pfam Kinesin motor domain 386 703 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium3878g00005 1014 Coils Coil 311 338 - -
Vium3878g00005 1014 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 342 703 IPR027417 -
Vium3878g00005 1014 MobiDBLite consensus disorder prediction 744 758 - -
Vium3878g00005 1014 FunFam Kinesin-like protein KIN-14A 322 706 - -
Vium3878g00005 1014 SMART ch_5 25 147 IPR001715 GO:0005515
Vium3878g00005 1014 MobiDBLite consensus disorder prediction 741 807 - -
Vium3878g00005 1014 MobiDBLite consensus disorder prediction 828 847 - -
Vium3878g00005 1014 SUPERFAMILY Calponin-homology domain, CH-domain 19 156 IPR036872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3878g00005 Vium-Chr3878 21283 29504 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3878g00005 310 704 Calmodulin-binding Proteins AT5G65930 41.397 4.93e-73 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3878g00005 K10406 - gmx:100786642 1640.55