Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium386g00025 ATGGAATCAATGAAGCAGAGGAACAAAGGAGGAAGTACAAGGTCGAGAATTTCAGCACTGATTGTGGATGACGATGCTGTCATTCGGAAAATCCACATGATGATGTTGGCACGGTTATTTAACATGGACGCAAAAACGGTTAGTGATGGAAAGGAAGCAGTGGATCTGCATCGATGTGGGGCAAATTTTGACATAATTTTCATGGACAAAGAAATGCCCATCATGGATGGTCACGAGGCCACAAAAGAGCTACGTGGTATGGGTGTGAAGTGCTTGATTGTGGGAATTACTACGCGTGCTAATGGGAAAGATGGTGAAGAATTTTTTGCTGCAGGATCCAACTATTGCTTTGAAAAGCCTCTTGATCGAACAAAGATTGAACGAGTCTTGCAAGACCATCCCAATTTTACAACTTGA 417 0.4269 MESMKQRNKGGSTRSRISALIVDDDAVIRKIHMMMLARLFNMDAKTVSDGKEAVDLHRCGANFDIIFMDKEMPIMDGHEATKELRGMGVKCLIVGITTRANGKDGEEFFAAGSNYCFEKPLDRTKIERVLQDHPNFTT 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium386g00025 138 SMART REC_2 17 130 IPR001789 GO:0000160
Vium386g00025 138 SUPERFAMILY CheY-like 16 133 IPR011006 -
Vium386g00025 138 PANTHER TWO-COMPONENT RESPONSE REGULATOR 6 132 - -
Vium386g00025 138 ProSiteProfiles Response regulatory domain profile. 18 134 IPR001789 GO:0000160
Vium386g00025 138 Pfam Response regulator receiver domain 20 129 IPR001789 GO:0000160
Vium386g00025 138 Gene3D - 1 135 - -
Vium386g00025 138 CDD REC_hyHK_CKI1_RcsC-like 20 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium386g00025 Vium-Chr386 190052 190580 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium386g00025 4 126 Response Regulator Gene Family AT3G04280 42.105 6.85e-28 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium386g00025 Response_reg 1.6e-18 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium386g00025 - - pvu:PHAVU_006G107500g 228.409