LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium386g00023	ATGGCGAAGAGGGAGCGAGTGAGAGGAGTGTCGGCGTCGGAATTGAAGGAGAGGTTGAGGGAATTGGTGAAGGCTATAGTTGACTCCGACGACTACGTGGTGGCAGCCGCCGACGAAGCCATCGCCACCCTTTCGGCTCTCAAACATTTAAAGTCTCCAGACTCTTTGGATGACTTTCCCCTCCCTCCCGAATTTCGATGCCCCATTTCAACCCAATTGATGACGGATCCCGTTATCTTATCCACCGGCCAGACTTATGATAGGCCATTCATTCAAAGGTGGTTGGATGAGGGTCACAGAACGTGTCCGCAGACACAGCAGGTCCTGTCTCACTCCATTTTAACACCTAATTACTTGGTCCGGGACATGATTGTGCAGTGGTGTAGGGAGCGTGGAATTGAGCTTCCTGAGCCTGTTAAGGACATTGATGGCGTGGTCACTAAGGCGGATAGGAACCACTTGAATTCGTTGCTTCGGAAGTTGTCATTGTCTGTTTCTGATCAGAAACAAGCTGCCAAGGAGCTTCGCCTTTTGACAAAGCGAATGCCTTCTATTCGAATCCTTGTTGGGGAGTCCAGTGATGTGATTCCCCAATTGCTGAGTCCATTATCATCGCCTGGCACGGCTTCTACTGACCCTGATCTCCACGAGGATTTGATCACCACGGTTCTCAATCTCTCTATCCATGATGATAACAAAAAGGCCTTTGCAGAGGATCCTGCGGTGATTTCTCTGCTTATTGATGCCTTGAAACGTGGAACAATTCAAACGAGGAGCAATGCTGCTGCTGCTATTTTCACATTGTCCGCGCTTGATTCCAACAAATACATCATTGGAAAATCCGGGGCTATCAAGCATTTGCTTGCGCTTTTGGATGAGGGACAGCCATTGGCCATGAAAGATGCTGCTTCGGCAATATTTAACCTTTGTCTTGTACACGAGAATAAAGGAAGGACAGTGCGAGATGGGGCAGTTCGGGTTATTCTGAACAAGATGATGGACCACATTCTAGTTGATGAGTTGTTGGCCATACTGGCACTCCTATCCAGTCATCCCAGGGCTGTTGAAGAAATGGGTGATCTAGGTGCTGTTCCTTTGTTATTGGGGATTATTAGGGAGAGTGCATCAGAGAGGAGCAAGGAAAATTGTGTTGCAATTCTGTATACAATCTGTTTTAGTGATAGAACTAAGTTGAAGGAAATTAGAGAAGAAGAAAGAGCAAATGGTACACTGTCAAAACTTGCACAATGTGGAACTTCAAGGGCCAAAAGGAAAGCTAACGGTATTCTTGAAAGGTTTAATAGATCCCCCTCCTTAACACACACTGCTTAG	1332	0.4685	MAKRERVRGVSASELKERLRELVKAIVDSDDYVVAAADEAIATLSALKHLKSPDSLDDFPLPPEFRCPISTQLMTDPVILSTGQTYDRPFIQRWLDEGHRTCPQTQQVLSHSILTPNYLVRDMIVQWCRERGIELPEPVKDIDGVVTKADRNHLNSLLRKLSLSVSDQKQAAKELRLLTKRMPSIRILVGESSDVIPQLLSPLSSPGTASTDPDLHEDLITTVLNLSIHDDNKKAFAEDPAVISLLIDALKRGTIQTRSNAAAAIFTLSALDSNKYIIGKSGAIKHLLALLDEGQPLAMKDAASAIFNLCLVHENKGRTVRDGAVRVILNKMMDHILVDELLAILALLSSHPRAVEEMGDLGAVPLLLGIIRESASERSKENCVAILYTICFSDRTKLKEIREEERANGTLSKLAQCGTSRAKRKANGILERFNRSPSLTHTA	443

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium386g00023	443	CDD	RING-Ubox_PUB	62	114	IPR045210	-
	Vium386g00023	443	SUPERFAMILY	ARM repeat	19	433	IPR016024	-
	Vium386g00023	443	FunFam	RING-type E3 ubiquitin transferase	338	439	-	-
	Vium386g00023	443	Gene3D	-	192	339	IPR011989	-
	Vium386g00023	443	ProSiteProfiles	U-box domain profile.	60	134	IPR003613	GO:0004842\|GO:0016567
	Vium386g00023	443	SUPERFAMILY	RING/U-box	50	138	-	-
	Vium386g00023	443	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	60	134	IPR013083	-
	Vium386g00023	443	Gene3D	-	340	437	IPR011989	-
	Vium386g00023	443	FunFam	RING-type E3 ubiquitin transferase	60	134	-	-
	Vium386g00023	443	FunFam	RING-type E3 ubiquitin transferase	191	335	-	-
	Vium386g00023	443	PANTHER	U BOX DOMAIN-CONTAINING	16	433	-	-
	Vium386g00023	443	SMART	arm_5	351	392	IPR000225	GO:0005515
	Vium386g00023	443	SMART	arm_5	229	270	IPR000225	GO:0005515
	Vium386g00023	443	SMART	arm_5	271	311	IPR000225	GO:0005515
	Vium386g00023	443	SMART	Ubox_2	64	127	IPR003613	GO:0004842\|GO:0016567
	Vium386g00023	443	Pfam	U-box domain	62	131	IPR003613	GO:0004842\|GO:0016567

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium386g00023	Vium-Chr386	152365	154279	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium386g00023	123	443	U-box Gene Family	AT3G07360	59.215	3.08e-125	364

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium386g00023	-		-	gmx:100806619	736.102