Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium386g00021 ATGTCTGAAGTGAATGCTACCCCTGAAGTTCCTCAAAACAACACCATCTACATCAATAACCTTAACGAGAAGATCAAGATTGATGAGTTGAAGAAGTCTCTGAACGCTGTTTTCACTCAGTTCGGGAAGATACTTGAGGTGTTAGCTTTTAAAACCCTAAAACACAAAGGTCAAGCTTGGGTGGTCTTTGAGGAGGTCTCTTCTGCTTCCAATGCTCTGCGGCAAATGCAAGGATTTCCTTTCTATGATAAGCCCATGAGAATACAGTATGCAAAGACCAAATCTGATGTAATAGCAAAAGCGGATGGTACTTTTGTTCCTAGGGAAAAACGTAAGAGGCATGATGACAAAGGCAAAAAGCGGAAGGACCAACATGATGCTAATTTAGCTGGAATGGGACTAAACCCAGCCTATTCTGGTGCTTATGGTGCAACACCTACGATACCTTATCCAGGTGGTGCAAAATCCATGGTACCTGAGGCTCCTGCTCCACCAAATAATATTCTCTTTATTCAGAATCTTCCCAATGAGTCAACTCCCATGATGCTGCAAATGCTCTTTCTCCAATATCCTGGATTCAAGGAAGTTAGAATGGTTGAAGCAAAGCCAGGAATTGCATTTGTGGAATATGGTGATGAGATGCAATCTACAGTGGCTATGCAGTCGCTGCAAGGTTTCAAGATAACCCCACAAAACCCTATGTTGATAACTTACGCCAAAAAATAG 726 0.4215 MSEVNATPEVPQNNTIYINNLNEKIKIDELKKSLNAVFTQFGKILEVLAFKTLKHKGQAWVVFEEVSSASNALRQMQGFPFYDKPMRIQYAKTKSDVIAKADGTFVPREKRKRHDDKGKKRKDQHDANLAGMGLNPAYSGAYGATPTIPYPGGAKSMVPEAPAPPNNILFIQNLPNESTPMMLQMLFLQYPGFKEVRMVEAKPGIAFVEYGDEMQSTVAMQSLQGFKITPQNPMLITYAKK 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium386g00021 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 167 241 IPR000504 GO:0003723
Vium386g00021 241 FunFam U2 small nuclear ribonucleoprotein B'' 158 241 - -
Vium386g00021 241 CDD RRM1_U1A_like 15 92 - -
Vium386g00021 241 Gene3D - 155 241 IPR012677 -
Vium386g00021 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 93 IPR000504 GO:0003723
Vium386g00021 241 SUPERFAMILY RNA-binding domain, RBD 12 230 IPR035979 GO:0003676
Vium386g00021 241 CDD RRM2_U1A_like 165 237 - -
Vium386g00021 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 86 IPR000504 GO:0003723
Vium386g00021 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 169 228 IPR000504 GO:0003723
Vium386g00021 241 FunFam U1 small nuclear ribonucleoprotein A 8 113 - -
Vium386g00021 241 SMART rrm1_1 15 89 IPR000504 GO:0003723
Vium386g00021 241 SMART rrm1_1 168 237 IPR000504 GO:0003723
Vium386g00021 241 MobiDBLite consensus disorder prediction 105 130 - -
Vium386g00021 241 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 81 241 - -
Vium386g00021 241 Gene3D - 7 113 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium386g00021 Vium-Chr386 131864 135878 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium386g00021 3 139 Eukaryotic Initiation Factors Gene Family AT4G34110 27.857 3.51e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium386g00021 K11091 - gmx:100500002 453.366