Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium386g00016 ATGGATGAGTGCGTCGAAGTGAAAGAGTATATTTACACGTGGGGTGAGGACGGGTTCCCGACCTCATTGTGCTGTCGAAATGCTCTCACGGTTGTGTCCAATGCGTTGGCCACACACGCACTGAGCTCGGGAGGACAAGTGTTCCTTTCCCAAGATCAATGGCAGCGTTGTTTGCAGTCATTTCACCCGCAACCAGGGATGTCACTTGATTCATGTGGCTTTGACAACTTTTACCGAGGAAGTTCCGTATGCTCTAACTTCATTTTGCAGGATGTTAGGACCCTGCAACCATACCAAGACGCATTGAGCCGGTGCTCCCACTTCGACCAACCTTTTGGTCAATCTTGTGCAGATTGTACCAGTGGAATATCGAACGTGAGAGATACTTTGTATTCTCAAGTTGAAAAACACAACAACGACATTGACAGAGCCATATGTGGGGTAGCAGCTATTGTTGGTCTTGCAGCTGGCAGACCAAATGATCCTCTCGTTGACAAATTTTTACTATGCTTGCCATCTTCAGCTTCAGGATCAGACAAGAGAGGATCTCTGTGGAAAGCCTTGCTGAGTGTGCCAGTAGTTGTGATTGTAACATTGATTGTGGTTATTATGGTGAAATGTTTGTCCAAGAAGAAGGGTCGTAAACCGGTTGACTTGCAAGACATCACTGCATGGTCTGGATTGTACTGGTTCAGCAAAACGGAAATTGAGAATGCCATGAATTATGGTGGTCGAAAGATAAGCCTTGGACGTGGAAGTGCAGGGCATGTATATAGAGGCGTTCTACCCAGTGGTCAAATAGTGGCCATCAAGCATTTAACAAAGAGTAATACCTCTGAGTCTTTCACTCGAGAAATTGAAGGCCTTTCAAGGCTTCGTCATCCAAACTTGGTTTGCCTCTTTGGCTGCTGCATTGAAGGGGATGAGAGATATTTAGTCTATGAATTTTGTGCAAACGGGAATCTTGCTCAACATCTCTTACGAAGAGACAGTCACTTGACCTGGGAAACAAGAGTGAGAATTTTGAGAGATTGTTCGTTTGCACTCAAGTACCTCCACCATCATATAGAAGGCTGTGTTGTCCATAGAGATATTAAGCTTACGAACATTCTTTTGACTGAGAAATACCAAGCGAAACTGTCAGATTTTGGACTGTCAAAGGTGATGGGAATCAAAGAGAGCAAGGTTTTTACCGATGTAAGAGGAACCATAGGCTACATGGATCCAGAATACATGAGTAATGCCAAGCTAACGTGTGCCAGTGATGTATACAGTTTTGGTATTGTTGCTTTGCAAATATTGTCTGGACAGAAAGTCATAGAGTTGGATCTTGATGCCAGAGACCAGCTCACAAGGAAGGCAAGAGATGTGAGTATGGGAAAGCGCCCATTGTCTGATTTTGAAGACCCACGACTAAAAGGAAAGGTTGATAAGGCAGACTTCGAAGCCATCCTACAAATTGCAGTGTTGTGTGTTGCCAAATCAAGCAAAGGTCGACCAACCATTGAGGTAGTTTTTGATGAATTGGACAAGGTCTGCATGGACACAGAAACCAAGATGAAGGTAAAGAAGGATGAGAGTTCATCATCAAACTCCACCCCCAGCTCCAAATCCTCCAAATCCTCCAAATCAGCTCCTCTTTGA 1644 0.444 MDECVEVKEYIYTWGEDGFPTSLCCRNALTVVSNALATHALSSGGQVFLSQDQWQRCLQSFHPQPGMSLDSCGFDNFYRGSSVCSNFILQDVRTLQPYQDALSRCSHFDQPFGQSCADCTSGISNVRDTLYSQVEKHNNDIDRAICGVAAIVGLAAGRPNDPLVDKFLLCLPSSASGSDKRGSLWKALLSVPVVVIVTLIVVIMVKCLSKKKGRKPVDLQDITAWSGLYWFSKTEIENAMNYGGRKISLGRGSAGHVYRGVLPSGQIVAIKHLTKSNTSESFTREIEGLSRLRHPNLVCLFGCCIEGDERYLVYEFCANGNLAQHLLRRDSHLTWETRVRILRDCSFALKYLHHHIEGCVVHRDIKLTNILLTEKYQAKLSDFGLSKVMGIKESKVFTDVRGTIGYMDPEYMSNAKLTCASDVYSFGIVALQILSGQKVIELDLDARDQLTRKARDVSMGKRPLSDFEDPRLKGKVDKADFEAILQIAVLCVAKSSKGRPTIEVVFDELDKVCMDTETKMKVKKDESSSSNSTPSSKSSKSSKSAPL 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium386g00016 547 Gene3D Phosphorylase Kinase; domain 1 204 316 - -
Vium386g00016 547 Gene3D Transferase(Phosphotransferase) domain 1 317 538 - -
Vium386g00016 547 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 185 536 - -
Vium386g00016 547 Pfam SPARK 14 136 IPR043891 -
Vium386g00016 547 MobiDBLite consensus disorder prediction 520 547 - -
Vium386g00016 547 SUPERFAMILY Protein kinase-like (PK-like) 226 508 IPR011009 -
Vium386g00016 547 Pfam Protein kinase domain 248 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium386g00016 547 SMART serkin_6 243 514 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium386g00016 547 FunFam probable receptor-like protein kinase At5g59700 317 528 - -
Vium386g00016 547 ProSiteProfiles Protein kinase domain profile. 243 512 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium386g00016 547 ProSitePatterns Serine/Threonine protein kinases active-site signature. 360 372 IPR008271 GO:0004672|GO:0006468
Vium386g00016 547 MobiDBLite consensus disorder prediction 527 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium386g00016 Vium-Chr386 107945 110678 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium386g00016 249 531 Receptor kinase-like Gene Family AT1G51800 41.667 7.68e-57 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Vium386g00016 Pkinase 3.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium386g00016 - - vum:124837890 1045.03