Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium386g00001 ATGGGAAACAATGAGGAAGAAAAATCTACCAAGACTGAAAAGCCTTCTTCACCTGCAACAATGGATCAGGCCAATCAGACCAACCAGCCCAATATTCATGTATATCCTGATTGGGCAGCCATGCAGGCATATTATGGGCAAAGAGTCACCATGCCACCATACTACAACTCGGCTGTGGCTTCTGGTCACGCTCCTCACCCATACATGTGGGGTCCACCACAGCCTATGATGCCACCTTATGGGCCTCCTTATGCAGCAATTTATTCACATGGAGGGGTTTACCCTGCAGTTCCTATCGGGCCACATACACATAGTCAAGGAGTTCCGTCTTCACCTGCTGCTGTGACTCCTTTAAGCATAGAGACGCCACCCAAATCATCAGGAAATAATGATCAGGGTTTAATGAAGAAATTGAAGGAGTTTGATGGACTTGCTATGTCAATAGGCAATGGCCATGCTGAAAGTGCAGAGCGTGGAGGTGAAAACAGGCTGTCACCGAGTGTGGATACTGAGGGTTCCAGTGATGGAAGTGATGACAACACTTCAGGGGCTAATCAAACAAGAAGGAAAAGAAGCCGTGGGTGAACACCAACCACTGATGGAGAAGAGAAAACTGAGATACAAAGCAGTCCCATTTCCAAAGATACTGCAGCTTCTAATAAGATCGTGGCAGTTGCCCCCGCCAGTGTTGCAGGAACAATAGTTGGACCTGTAGTTTCTTCAGGTATGACCACCGTGCTGGAGCTGCGAAATCCTTCCAGTGTTCATTCTAAAGCAAATACCACAAGTGCACCACAACCTTCTGTATTGCCTGCAGAAACTTGGTTACAGAATGAGCGTGAGCTGAAACGAGAGAGGCGGAAACAATCTAACCGAGAATCTGCTAGAAGGTCCAGACTAAGGAAGCAGGCTGAAACTGAAGAACTGGCACGAAAAGTTGATTCCTTGAATTCTGAGAATGGGACACTGAAATCAGAAATAAATCGACTGACTGAAAGTTGCGAAAAAATGAGAGTGGAAAATGCAACATTAAGGGAAAAACTTAAAATTGCTCGACTGGGACAAACACAAGAGATAACTTTGAACATAATTGACAGCGAGAGTGCTACACCTGTAAGCACAGAAAACTTACTATCTAGAGTTAATAATAATTCTAGTTCCAACGATAGAACTATGGAGGATGAGAATGATTTTTGTGAAAATAAACCAAACTCTGGTGCAAAGCTGCATCAACTACTGGATACAAATCCTAGAGCTGATGCTGTTGCTGCTGGGTGA 1278 0.4468 MGNNEEEKSTKTEKPSSPATMDQANQTNQPNIHVYPDWAAMQAYYGQRVTMPPYYNSAVASGHAPHPYMWGPPQPMMPPYGPPYAAIYSHGGVYPAVPIGPHTHSQGVPSSPAAVTPLSIETPPKSSGNNDQGLMKKLKEFDGLAMSIGNGHAESAERGGENRLSPSVDTEGSSDGSDDNTSGANQTRRKRSRGXTPTTDGEEKTEIQSSPISKDTAASNKIVAVAPASVAGTIVGPVVSSGMTTVLELRNPSSVHSKANTTSAPQPSVLPAETWLQNERELKRERRKQSNRESARRSRLRKQAETEELARKVDSLNSENGTLKSEINRLTESCEKMRVENATLREKLKIARLGQTQEITLNIIDSESATPVSTENLLSRVNNNSSSNDRTMEDENDFCENKPNSGAKLHQLLDTNPRADAVAAG 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium386g00001 425 SMART brlzneu 279 343 IPR004827 GO:0003700|GO:0006355
Vium386g00001 425 MobiDBLite consensus disorder prediction 253 303 - -
Vium386g00001 425 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 281 344 IPR004827 GO:0003700|GO:0006355
Vium386g00001 425 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 401 IPR044827 GO:0003700|GO:0006355|GO:0043565
Vium386g00001 425 Coils Coil 299 347 - -
Vium386g00001 425 Pfam Disordered region downstream of MFMR 131 259 - -
Vium386g00001 425 MobiDBLite consensus disorder prediction 166 192 - -
Vium386g00001 425 MobiDBLite consensus disorder prediction 277 303 - -
Vium386g00001 425 CDD bZIP_plant_GBF1 284 334 IPR045314 GO:0003700|GO:0006355
Vium386g00001 425 MobiDBLite consensus disorder prediction 14 33 - -
Vium386g00001 425 Pfam G-box binding protein MFMR 1 96 IPR012900 -
Vium386g00001 425 FunFam G-box binding factor 3 282 337 - -
Vium386g00001 425 Gene3D - 282 337 - -
Vium386g00001 425 MobiDBLite consensus disorder prediction 104 133 - -
Vium386g00001 425 MobiDBLite consensus disorder prediction 102 216 - -
Vium386g00001 425 MobiDBLite consensus disorder prediction 1 33 - -
Vium386g00001 425 MobiDBLite consensus disorder prediction 381 409 - -
Vium386g00001 425 SUPERFAMILY Leucine zipper domain 282 338 IPR046347 GO:0003700|GO:0006355
Vium386g00001 425 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 286 301 IPR004827 GO:0003700|GO:0006355
Vium386g00001 425 MobiDBLite consensus disorder prediction 253 273 - -
Vium386g00001 425 MobiDBLite consensus disorder prediction 201 216 - -
Vium386g00001 425 Pfam bZIP transcription factor 279 341 IPR004827 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium386g00001 1 425 bZIP Transcription Factor Family AT2G46270 47.564 1.98e-111 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium386g00001 MFMR_assoc 9.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium386g00001 K09060 - gmx:100781875 692.96