Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3868g00105 ATGTTTTTTCATGAACTCCAATTCACAACACACTGCAGCTCTTCACTCTCTTCACTCCCTCACTCACCTTCAATTACTAGATCCAACCGCTTTCTCTCTCTTTCTTTCTCTCTCTTGAAATCAATGGAGGAATCAGGGGAAAATTGGCCTTCTGATTCTTACTTGGAAGCAGGTGATGACGTTAAGGATTTATGTTTTGATGATGAAGAATTCGCGAGCGAGGAGGATGACGGAGATTCCTTTCCTGAGATGAAAAGTACGGACAGAAAACAACGACAACAGAAACTCAGGGAGAGGTTTCCTTGCACTCCAGCACATTCTGGTTTTCAGAAGATGGACAAGAAATCGATTCTAGACAAAGCCAGCAACTACGTGAAACAGCTTGAGCAACGAGTGAGAGAGCTGGAACAAGAAGTTCAATCGAACAAGGTTTGCGCGAGCAGCAGCAGCTCCTTCGAAGTGAACTCCAATGGATCAAATCAAATTCTTCCAGAAGTGAAAGTGAGAGTGTTGCAGAAGGAAGTGCTGATAATAGTTCACTGTGAGAAACAGAAAGGAATCGTGCTCAAAATACTATCACACCTCGAAAATATCAATCTATCTGTGCTCAACAGCAGCGTCTTGCGCTTTGGAAAATCCACCATCGACATCACCATCATTGCTCAGATGGGAGAGGGATACCAGATGGGAGTGGATGAGCTGGTGGAGACACTGAGATTAACGATCTTGAATCAGTAG 738 0.439 MFFHELQFTTHCSSSLSSLPHSPSITRSNRFLSLSFSLLKSMEESGENWPSDSYLEAGDDVKDLCFDDEEFASEEDDGDSFPEMKSTDRKQRQQKLRERFPCTPAHSGFQKMDKKSILDKASNYVKQLEQRVRELEQEVQSNKVCASSSSSFEVNSNGSNQILPEVKVRVLQKEVLIIVHCEKQKGIVLKILSHLENINLSVLNSSVLRFGKSTIDITIIAQMGEGYQMGVDELVETLRLTILNQ 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3868g00105 245 MobiDBLite consensus disorder prediction 72 93 - -
Vium3868g00105 245 PANTHER BHLH TRANSCRIPTION FACTOR 89 243 - -
Vium3868g00105 245 MobiDBLite consensus disorder prediction 78 93 - -
Vium3868g00105 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 90 141 IPR036638 GO:0046983
Vium3868g00105 245 Coils Coil 118 145 - -
Vium3868g00105 245 Gene3D - 86 144 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3868g00105 Vium-Chr3868 517874 521887 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3868g00105 90 244 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.791 4.97e-23 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3868g00105 - - vum:124835915 437.573