Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3868g00104 ATGGAGGACTCGTGGCAAAACTGGCTCTCTCATTTGGGAATGAATGACAACTTTGGGTGCACCAGCAATGACGGTGTACTCTTTGAAGAGATGATGTGGTTGAATAGTGCTGGGCAGGGATGTGATAGCTCCAATAACGAGGTAGCATGTATGGAGGTAAAAGAGGAACATTCAAAGTGTTGTTGGCGTAAAAGGGGTGTCGAGAAGCATCAAGAGTTGGAGGCAAAGGGAAGGGAGAAGAAAGGAACAAAAAGGGCAAGAACTTCTTCTGAGATAGAATATCACATCATCTCTGAGAGAAAAAGGAGACAGGATATAGCAGAGAAATTCATAGCACTCTCAGCTACCATACCTGGCTTGAAGAAGATAGACAAGGTATCAATCCTTGGGGAAGCCATAAAGTACATGCGACAACTTCAACAACGCATAGCAGTGTTGGAAAAAGCGAGCAACAATAACAGTGTAAAGCCGTTTATCATAGCCAAATCACACCTTTGTTCAGCATCATGTTCAGCAAATTCTGACATTGAAGTGCTCCCTGAAGTTGAAGCAAGTGGGTTAGAGAATGAAGTGCTGATTAGAATCTACTGTGAGAAACGAAAGGATATCTTGCTAAACCTAATGACCCTTCTAAAAGGTGTTCATCTCTCAGTAACCAGTAGCAGCGTATTGCCATTTGGAAACTCTCTTCTCAACATCATCATTGTTGCTCGGATGAGTGAGGAGTACAACTTGACGGTGACTGATTTGGTTAAGACGTTGAAGCAGAATCTTTTCGTGTTTTATGAGGTGTAA 795 0.4252 MEDSWQNWLSHLGMNDNFGCTSNDGVLFEEMMWLNSAGQGCDSSNNEVACMEVKEEHSKCCWRKRGVEKHQELEAKGREKKGTKRARTSSEIEYHIISERKRRQDIAEKFIALSATIPGLKKIDKVSILGEAIKYMRQLQQRIAVLEKASNNNSVKPFIIAKSHLCSASCSANSDIEVLPEVEASGLENEVLIRIYCEKRKDILLNLMTLLKGVHLSVTSSSVLPFGNSLLNIIIVARMSEEYNLTVTDLVKTLKQNLFVFYEV 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3868g00104 264 Gene3D - 98 172 IPR036638 GO:0046983
Vium3868g00104 264 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 93 152 IPR036638 GO:0046983
Vium3868g00104 264 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 90 139 IPR011598 GO:0046983
Vium3868g00104 264 SMART finulus 96 145 IPR011598 GO:0046983
Vium3868g00104 264 Pfam Helix-loop-helix DNA-binding domain 95 140 IPR011598 GO:0046983
Vium3868g00104 264 PANTHER BHLH TRANSCRIPTION FACTOR 54 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3868g00104 Vium-Chr3868 502280 504399 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3868g00104 67 261 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.756 5.84e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium3868g00104 HLH 8.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3868g00104 - - gmx:100778916 335.109