Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3868g00103 ATGAAGGAGGTTTCATGGCAGAATGATTGGCATCCTCAAACGGAAATGGATTGCCAGAACGAGTTCTTCTACGACTATGACCCTATCAACGATGACTGTGATGATTTCTTCACCGACATCATCCTCCAGCCGGCACCGCCCACGCCGTTCTCCTCCGAGAGCGAAAGCGATCACTCTTTTCGCGCTTCCAAGACCGTCCAAACCAATTCCTTCCTCCCCAGCGCCGCCGTTAACACCGTCGCTTCCAAACGCTCCGCTCCCCGGACTTACATTCTCTCCTTCGATAGCTCAACGGTGGTACCCGCCACACCCGAACCCTCCGTCCCTTCTTCCCTTTTACCCGCTAAACGGGCCCTCCACACTCAAAGCCCGACAACCAGGCCCAATCAAGCATCTAAGAGAACCCGAACCTCTTCTCAGACCGTCGATCACATAATGGCCGAGAGAAAGAGGAGGCAAGAACTCACCGAGAGATTCATAGCACTCTCAGCCACCATTCCCGGCTTGAACAAGACGGACAAGGCTTCGGTGCTTCGAGCAGCGATCGATTACGTGAAACAACTCAAAGAAAAGGTAGATGAACTGGAGAAGCAAAACAGAAAGAGTGCAGCAGAGACAGTAATATTGGTGAATAAAACCGACTCAAATGGAAATGAAGACAGCACCAACTCCACTGAAACGAACTCCAGCATGCTTCCTGAGATGGAAGCGAGAGTGTTGGGGAAGGAGGTGCTCATTGAGATCCACTGTGAGAAAGAATATGGTGTTGAGCTAAAATTATTAGACCATCTTGAAAATCTTCATCTCTGCGTAACCGGTAGCAGTGTTTTGCCATTTGGGAATTCCGCTCTCTGCATTACCATCACAGCTCAGATGGATGAGGAGTATGAGATGACAGTGAATGATCTGGTGAAAAACCTGAGAGAAGTTCTATCGAAGTCTCATTTGGTAAGTGACAGTGATCCGTACTAG 972 0.4938 MKEVSWQNDWHPQTEMDCQNEFFYDYDPINDDCDDFFTDIILQPAPPTPFSSESESDHSFRASKTVQTNSFLPSAAVNTVASKRSAPRTYILSFDSSTVVPATPEPSVPSSLLPAKRALHTQSPTTRPNQASKRTRTSSQTVDHIMAERKRRQELTERFIALSATIPGLNKTDKASVLRAAIDYVKQLKEKVDELEKQNRKSAAETVILVNKTDSNGNEDSTNSTETNSSMLPEMEARVLGKEVLIEIHCEKEYGVELKLLDHLENLHLCVTGSSVLPFGNSALCITITAQMDEEYEMTVNDLVKNLREVLSKSHLVSDSDPY 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3868g00103 323 MobiDBLite consensus disorder prediction 209 232 - -
Vium3868g00103 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 139 188 IPR011598 GO:0046983
Vium3868g00103 323 Pfam Helix-loop-helix DNA-binding domain 143 189 IPR011598 GO:0046983
Vium3868g00103 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 137 209 IPR036638 GO:0046983
Vium3868g00103 323 Coils Coil 178 205 - -
Vium3868g00103 323 PANTHER BHLH TRANSCRIPTION FACTOR 23 313 - -
Vium3868g00103 323 MobiDBLite consensus disorder prediction 100 142 - -
Vium3868g00103 323 Gene3D - 136 208 IPR036638 GO:0046983
Vium3868g00103 323 SMART finulus 145 194 IPR011598 GO:0046983
Vium3868g00103 323 MobiDBLite consensus disorder prediction 209 233 - -
Vium3868g00103 323 MobiDBLite consensus disorder prediction 116 142 - -
Vium3868g00103 323 MobiDBLite consensus disorder prediction 45 65 - -
Vium3868g00103 323 MobiDBLite consensus disorder prediction 44 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3868g00103 Vium-Chr3868 496467 498573 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3868g00103 96 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.541 3.35e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium3868g00103 HLH 4.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3868g00103 - - vun:114166804 514.227