Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3868g00102 ATGGGGGAGCCATGCCAAAAATATTGGTTCTCTGATATGGATATACAAGATTTTGATTTCTTTAACCAAAGCCACAACAAGATTGAGTCACTGGATGATGAGGATCAGATCTTTCGGGAGATCATGCATCAACCAGCTTTCTCTTCTGACAGTGAAACTCACTCTCCCAAAGTTCAAAGCAAATCAACCTACGGTGGCAGTGATTACACAGCCCTCACAAGCAGCAAGAGCAGCAACCTTGTGATGAAGACCAACAGCTCCAATAATTTCCTCTTCACATCACAACTTGCACCGGAGAAACCTGCCACAGCCATTTCTCCAACTGCGTACATTCTATCTTTCAATGACTCCACCGTAGTTGCGGCTACCTGCCAAACCTACGATGGAAAACAGCCGTACCAAGGGGATGCATTTGCAGGGAGTGGTGGCGCGTGTCTTCCCTCAAAAGGGGTCTCAGAAAAACATGAAATTGAACCTAAGACCAACTCAGCAACAAGAAAAGGTAGAAGTTCTGCAGAGACACTAGACCATATAATGACTGAGAGAAAAAGGAGACGGGAACTGACAGAGAGATTCATTGCACTTTCAGCCACCATACCTGGTTTGAAGAAGATTGACAAGGCCACCATACTTTGCGAAGCAATCACTTATGTGAAACGACTTAAAGAACGTGTAAGAGAGCTAGAAGAACAATGTAAGAGGACAAGGGTAGAGTCAGTGTCATTTGTTCATCAGAGATCCAACATTATTTCTACTGATAAAGGCACAACCTCAGGTGCAACGAAATCTGATGAATGCTATAAAACCAATGAAGCACTCCCTACAGTGGAAGCAAGAGTGTTTAAAAAGGATGTACTGATCCGGATTCACTGCAAGATACAACATGGCATTTTGATAAAAATTTTGGATTATCTTAATAATCTCGATCTCTCCACAACCAGCAACAGTGTAATGCCATTCGGAAGTTCCACTCTTGACATCAGCATTGTCGCTCAGATGGGTGAAAAATTCAACGCAACAATGAATGATCTAGTGAAAAACCTGAGACTGGTTCTGTTGCAGTCATCTGAAGTTCAAAAATGA 1083 0.4266 MGEPCQKYWFSDMDIQDFDFFNQSHNKIESLDDEDQIFREIMHQPAFSSDSETHSPKVQSKSTYGGSDYTALTSSKSSNLVMKTNSSNNFLFTSQLAPEKPATAISPTAYILSFNDSTVVAATCQTYDGKQPYQGDAFAGSGGACLPSKGVSEKHEIEPKTNSATRKGRSSAETLDHIMTERKRRRELTERFIALSATIPGLKKIDKATILCEAITYVKRLKERVRELEEQCKRTRVESVSFVHQRSNIISTDKGTTSGATKSDECYKTNEALPTVEARVFKKDVLIRIHCKIQHGILIKILDYLNNLDLSTTSNSVMPFGSSTLDISIVAQMGEKFNATMNDLVKNLRLVLLQSSEVQK 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3868g00102 360 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983
Vium3868g00102 360 PANTHER BHLH TRANSCRIPTION FACTOR 42 354 - -
Vium3868g00102 360 Coils Coil 218 238 - -
Vium3868g00102 360 MobiDBLite consensus disorder prediction 45 65 - -
Vium3868g00102 360 Gene3D - 162 238 IPR036638 GO:0046983
Vium3868g00102 360 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 243 IPR036638 GO:0046983
Vium3868g00102 360 SMART finulus 178 227 IPR011598 GO:0046983
Vium3868g00102 360 Coils Coil 353 360 - -
Vium3868g00102 360 MobiDBLite consensus disorder prediction 46 65 - -
Vium3868g00102 360 MobiDBLite consensus disorder prediction 150 173 - -
Vium3868g00102 360 Pfam Helix-loop-helix DNA-binding domain 177 221 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3868g00102 Vium-Chr3868 485741 487820 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3868g00102 156 352 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.546 1.32e-41 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium3868g00102 HLH 2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3868g00102 - - gmx:100777846 522.702