Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3868g00101 ATGAACGACGAAATCTACTTACACGCGCCAACCACCGCCACCGCCACCGCCGCTAACGTTTTGCTTCCGAAGCCCGAAACGGTGTCGTCGCACGAAACGGGGCTCGAAGGGATTGCCGCGGTTGTTGGAGAACACGTCCTTTTCGGAACGTCGTCGACGTTGCATGTTCCAGAGACGCCGAAGAAAACGGCTGGGGTGTCGGTGAACAAGAGTTACCGAGGAGTGAGGAAGAGACCGTGGGGGAGGTGGTCGGCGGAGATACGCGACCGGATCGGGCGGTGCCGCCACTGGCTGGGGACGTTCGACACGGCGGAGGAAGCGGCGCGTGCGTACGACGCGGCGGCGAGAAGACTTAGAGGCGCGAAGGCGAGGACCAACTTCAAGATACCCTCGGTGCTGCCTCTTTCTCCGTCGTCGGAAGGTGGTGTTGTGAAGCCGAAAGCTGCCCGGAATAACGCCAGGAAGTGTTCCTCTGTGGAACAATTGTTCAGCGGTGTACCTCAAGTTCGAAGAAACGATGGCGGTGGCGAGAATCTGAACGTAGACGTGAATTTGAAGCTGGATGTGAGGAACAGTAGAATGGTTATTTAG 591 0.5804 MNDEIYLHAPTTATATAANVLLPKPETVSSHETGLEGIAAVVGEHVLFGTSSTLHVPETPKKTAGVSVNKSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGAKARTNFKIPSVLPLSPSSEGGVVKPKAARNNARKCSSVEQLFSGVPQVRRNDGGGENLNVDVNLKLDVRNSRMVI 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3868g00101 196 CDD AP2 70 129 IPR001471 GO:0003700|GO:0006355
Vium3868g00101 196 FunFam Ethylene-responsive transcription factor 2 70 129 - -
Vium3868g00101 196 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Vium3868g00101 196 PRINTS Ethylene responsive element binding protein signature 94 110 IPR001471 GO:0003700|GO:0006355
Vium3868g00101 196 ProSiteProfiles AP2/ERF domain profile. 71 128 IPR001471 GO:0003700|GO:0006355
Vium3868g00101 196 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 59 150 - -
Vium3868g00101 196 Coils Coil 104 124 - -
Vium3868g00101 196 SMART rav1_2 71 134 IPR001471 GO:0003700|GO:0006355
Vium3868g00101 196 SUPERFAMILY DNA-binding domain 71 128 IPR016177 GO:0003677
Vium3868g00101 196 Gene3D AP2/ERF domain 70 129 IPR036955 GO:0003700|GO:0006355
Vium3868g00101 196 Pfam AP2 domain 71 120 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3868g00101 Vium-Chr3868 476992 477860 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3868g00101 23 134 AP2-EREBP Transcription Factor Family AT1G80580 61.789 2.02e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium3868g00101 AP2 2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3868g00101 - - gmx:102667667 279.256