Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3868g00097 ATGGCAGCAAAGATGGTGTGCGTGACTGGTGCTGGAGGATTCGTGGCGTCATGGCTTGTTCAGCTTCTTCTCTCCAAAGGTTACAATGTCCATGGAACAGTGAGACAACCCGGTAGTGAGAAATATGAGCACTTGAAGAAACTGGAGGGAGCTTTTGAAAACCTCACACTCTTCAAGGCAGATCTCTTGAATTACGAATCTATCCTCTCAGCAATTGCTGGATGCACTGCTGTTTTTCATGTCGCAAGTCCTGTACCCTCAACAGTTGTTCCCAACCCTCAGGTAGAAGTGATTGAACCTGCTGTGCAAGGAACCATTAACGTACTTCATGCTTGTCTTGAAACTAAAGTACAACGAGTTGTCTATGTGTCATCGATATCTGCTATTAGCATTGGCCCAAATATGCCTAAAGATAAAGTGATTGATGAGTCCTATTGGTCTGATAAAGATTACTGCAAAAAAACTCAGAACTGGTACTGTTATTCAAAGACAGAGGCAGAGGAGCAGGCCCTGGACTTTGGAAAAAGAACTGGCCTTGATGTGGTAAGCATTTGCCCTTCCATTGTGTGGGGGCCAATTTTGCAGTCAACCACTGTCAATGCAAGTAGCTTGGTTCTCCCCAAACTTTTGAAAGGTGGTGACTCATTTGAAAATAAGACCCGTTGGATAGTCGATGTACGGGATTTAGTTGATGCAATACTTTTGGTGTACGAGAAGCCTGAGGCAGAACGGAGATACATATGCACTGCACACACCATCAAGACACGGGATTTGGTAGAGAAACTGAAGAGTATATATCCAAGCTACAAGTACCCTTCCAACTTCACTGAGCTAGATGATTACTTAAGGTTCAGCTCAGAGAAACTAGAAAGGTTGGGTTGGAAATACAGGTCGCTCGAGGAAACACTCATTGATTCTGTTGAGAGCTATCGAGAGGCTGGACTCCTGCAATTCGAATAA 960 0.4417 MAAKMVCVTGAGGFVASWLVQLLLSKGYNVHGTVRQPGSEKYEHLKKLEGAFENLTLFKADLLNYESILSAIAGCTAVFHVASPVPSTVVPNPQVEVIEPAVQGTINVLHACLETKVQRVVYVSSISAISIGPNMPKDKVIDESYWSDKDYCKKTQNWYCYSKTEAEEQALDFGKRTGLDVVSICPSIVWGPILQSTTVNASSLVLPKLLKGGDSFENKTRWIVDVRDLVDAILLVYEKPEAERRYICTAHTIKTRDLVEKLKSIYPSYKYPSNFTELDDYLRFSSEKLERLGWKYRSLEETLIDSVESYREAGLLQFE 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3868g00097 319 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 5 307 - -
Vium3868g00097 319 FunFam NAD(P)-binding Rossmann-fold superfamily protein 1 317 - -
Vium3868g00097 319 Pfam NAD dependent epimerase/dehydratase family 6 243 IPR001509 -
Vium3868g00097 319 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 4 315 IPR036291 -
Vium3868g00097 319 CDD FR_SDR_e 6 294 - -
Vium3868g00097 319 Gene3D - 1 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3868g00097 Vium-Chr3868 447728 455419 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3868g00097 6 316 Monolignol Biosynthesis Gene Families AT2G33590 61.859 1.44e-140 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3868g00097 - - gmx:100784817 516.538