Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3868g00096 ATGGCAGCAAAGATGGTGTGCGTGACTGGTGCTGGAGGATTCGTGGCGTCATGGCTTGTTCAGCTTCTTCTCTCCAAAGGTTACAATGTCCATGGAACAGTGAGACAACCCGGTAGTGAGAAATATGAGCACTTGAAGAAACTGGAGGGAGCTTTTGAAAACCTCACACTCTTCAAGGCAGATCTCTTGAATTACGAATCTATCCTCTCAGCAATTGCTGGATGCACTGCTGTTTTTCATGTCGCAAGTCCTGTACCCTCAACAGTTGTTCCCAACCCTCAGGTAGAAGTGATTGAACCTGCTGTGCAAGGAACCATTAACGTACTTCATGCTTGTCTTGAAACTAAAGTACAACGAGTTGTCTATGTGTCATCGATATCTGCTATTAGCATTGGCCCAAATATGCCTAAAGATAAAGTGATTGATGAGTCCTATTGGTCTGATAAAGATTACTGCAAAAAAACTCAGAACTGGTACTGTTATTCAAAGACAGAGGCAGAGGAGCAGGCCCTGGACTTTGGAAAAAGAACTGGCCTTGATGTGGTAAGCATTTGCCCTTCCATTGTGTGGGGGCCAATTTTGCAGTCAACCACTGTCAATGCAAGTAGCTTGGTTCTCCCCAAACTTTTGAAAGGTGGTGACTCATTTGAAAATAAGACCCGTTGGATAGTCGATGTACGGGATTTAGTTGATGCAATACTTTTGGTGTACGAGAAGCCTGAGGCAGAACGGAGATACATATGCACTGCACACACCATCAAGACACGGGATTTGGTAGAGAAACTGAAGAGTATATATCCAAGCTACAAGTACCCTTCCAACTTCATTGCCGGCAGCTTCACTGAGCTAGATGATTACTTAAGGTTCAGCTCAGAGAAACTAGAAAGGTTGGGTTGGAAATACAGGTCGCTCGAGGAAACACTCATTGATTCTGTTGAGAGCTATCGAGAGGCTGGACTCCTGCAATTCGAATAA 975 0.4441 MAAKMVCVTGAGGFVASWLVQLLLSKGYNVHGTVRQPGSEKYEHLKKLEGAFENLTLFKADLLNYESILSAIAGCTAVFHVASPVPSTVVPNPQVEVIEPAVQGTINVLHACLETKVQRVVYVSSISAISIGPNMPKDKVIDESYWSDKDYCKKTQNWYCYSKTEAEEQALDFGKRTGLDVVSICPSIVWGPILQSTTVNASSLVLPKLLKGGDSFENKTRWIVDVRDLVDAILLVYEKPEAERRYICTAHTIKTRDLVEKLKSIYPSYKYPSNFIAGSFTELDDYLRFSSEKLERLGWKYRSLEETLIDSVESYREAGLLQFE 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3868g00096 324 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 5 312 - -
Vium3868g00096 324 Pfam NAD dependent epimerase/dehydratase family 6 243 IPR001509 -
Vium3868g00096 324 CDD FR_SDR_e 6 299 - -
Vium3868g00096 324 Gene3D - 1 324 - -
Vium3868g00096 324 FunFam NAD(P)-binding Rossmann-fold superfamily protein 1 322 - -
Vium3868g00096 324 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 4 320 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3868g00096 Vium-Chr3868 447728 455420 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3868g00096 6 321 Monolignol Biosynthesis Gene Families AT2G33590 61.199 7.92e-139 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3868g00096 - - gmx:100784817 510.375