Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3868g00082 ATGGATCTTCAAAGGCAAGAGCCATGCCCTTTTGAGAGCTTGAACATGATTACATTTTCAGATACTATGCCATGCCAAAGATCTTCCATAGACACTCAAAGAAAGAGGAATCACACAGAAAGTGATGATCAAAAGCACCCAAATGACTCAAATCCTCGTGTCTTACTAGATCTAAGTCTCTCCAACAAGGATTCAGGTGATGATGATGAGTCAAAGCCAGAACTCAACCTCCTCAATTGTTTCCATACGAATTTCTCTGAAAATTCATCAGAATCTAGTCAGGGAAATGAACTGGATCCCCGGGTTTTCTCATGCAACTACTGCCAAAGAAAGTTTTATAGTTCTCAGGCACTGGGGGGACACCAGAATGCACACAAACGTGAAAGAACTTTAGCAAGAAGAGGATACAAAGCAGGTGCAGCAGATTTTGGACACACGTATTCCACCGTGCCTTTTCTTCCTTCTCACGGCTTATACAACAAATCACTTGGAATTCAGGTTCATGCCATGATTAACAAACCTTCTCATCAAGCACCCATTTTTGGGTTGTGCCGTTCCAATGGGTGGCAGAGGCAGCCTTTGGATTCTCAACCAGCAATTGGAAATTTTCGTGTGGGGGCAGAATCTGAGTCATCCTTGGCTGATAGTGTTCCAAAAGTAGGCAAGTTTTCCACAAGGGTAGTGACAGAGGGATTTGGAGGACACTGTTTTGGTAGCTTTTCTCATTTGAAGTCTAAACAAGAGAAGTTGCAGAAGCTTGACTTGTCCCTTAAGCTCTAA 780 0.4295 MDLQRQEPCPFESLNMITFSDTMPCQRSSIDTQRKRNHTESDDQKHPNDSNPRVLLDLSLSNKDSGDDDESKPELNLLNCFHTNFSENSSESSQGNELDPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLARRGYKAGAADFGHTYSTVPFLPSHGLYNKSLGIQVHAMINKPSHQAPIFGLCRSNGWQRQPLDSQPAIGNFRVGAESESSLADSVPKVGKFSTRVVTEGFGGHCFGSFSHLKSKQEKLQKLDLSLKL 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3868g00082 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
Vium3868g00082 259 MobiDBLite consensus disorder prediction 31 50 - -
Vium3868g00082 259 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Vium3868g00082 259 SUPERFAMILY beta-beta-alpha zinc fingers 100 130 IPR036236 -
Vium3868g00082 259 Gene3D Classic Zinc Finger 81 142 - -
Vium3868g00082 259 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 259 IPR044246 GO:0009788
Vium3868g00082 259 MobiDBLite consensus disorder prediction 22 73 - -
Vium3868g00082 259 FunFam Zinc finger protein 2 81 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3868g00082 Vium-Chr3868 387582 388969 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3868g00082 9 259 C2H2 Transcription Factor Family AT5G10970 38.951 5.27e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium3868g00082 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3868g00082 - - gmx:100816861 419.468