Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3868g00079 ATGGACAGCGAGGAAGTCCCATCAGCACCTTCCACACCTGCAACACCAGGGGCTCCTCTTTTTGGTAGCAACCTCAGGTTTGAGAAACCTAATGTTTTAAGGAAATCGTCCTTCCTCAGAAGTTGCAAATGCTTCAGTACTGTTGAACAATGGACCTTGGAAGATGGAGCCAAGCCTAGAGTTTCTTGCTCTTTACCATCCTCTCCCATCCCCCTAGCAAAAAAGGTTGGAGCTGAGTTTATTGGCACGTTCATCCTCATGTTTGCTGCTATTGGCACTGCTATTGTGAACCAGAAGACTCATGGCTCGGAGACTCTGATTGGATGTGCTGCAGCAAATGGACTTGCTGTCATGATCATCATTTTCTCCACTGGTCACATCTCTGGGGCTCATCTCAACCCCGCTGTCACCATTTCCTTCGCTGCATTAAAGCATTTTCCGTGGAAGAATGTGCCAGTGTATATTGTTACACAAGTTTTGGCATCAGTAAGTGCTGCATTTGCTCTGAAAGTGGTTTTTCATCCCTTCATGAGCGGTGGAGTGACGGTCCCTTCAGTAGGATATGGGCAAGCTTTCGCCACAGAGTTCATTGTCAGCTTTATTCTCATGTTCGTTGTCACTGCAGTGGCCACCGACACAAGAGCTGTGGGAGAGCTTGCAGGAATAGCAGTGGGAGCTACAGTGATGCTCAACATACTTATTGCAGGGCCAGCAACTGGAAGTTCAATGAACCCTGTAAGAACATTGGGTCCAGCCATTGCTGCAAACAACTACAAGGGCATATGGGTGTATCTCATTGCTCCCATATTTGGAACTCTCTGTGGGGCAGGTGCCTACACTGTGGTCAAGCTGCCCGAGGAAGAGGCAACAAAGCCACCACCTCATTCGCCTTCTGCCATTGTTGGGAGCTTCAGAAGCTCATGA 924 0.4848 MDSEEVPSAPSTPATPGAPLFGSNLRFEKPNVLRKSSFLRSCKCFSTVEQWTLEDGAKPRVSCSLPSSPIPLAKKVGAEFIGTFILMFAAIGTAIVNQKTHGSETLIGCAAANGLAVMIIIFSTGHISGAHLNPAVTISFAALKHFPWKNVPVYIVTQVLASVSAAFALKVVFHPFMSGGVTVPSVGYGQAFATEFIVSFILMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPATGSSMNPVRTLGPAIAANNYKGIWVYLIAPIFGTLCGAGAYTVVKLPEEEATKPPPHSPSAIVGSFRSS 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3868g00079 307 FunFam Aquaporin NIP2-1 63 293 - -
Vium3868g00079 307 ProSitePatterns MIP family signature. 131 139 IPR022357 -
Vium3868g00079 307 PRINTS Major intrinsic protein family signature 74 93 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium3868g00079 307 PRINTS Major intrinsic protein family signature 113 137 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium3868g00079 307 PRINTS Major intrinsic protein family signature 225 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium3868g00079 307 PRINTS Major intrinsic protein family signature 194 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium3868g00079 307 PRINTS Major intrinsic protein family signature 150 169 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium3868g00079 307 PRINTS Major intrinsic protein family signature 262 282 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium3868g00079 307 Gene3D Glycerol uptake facilitator protein. 60 295 IPR023271 -
Vium3868g00079 307 PANTHER AQUAPORIN NIP2-1 49 291 IPR034294 -
Vium3868g00079 307 MobiDBLite consensus disorder prediction 1 22 - -
Vium3868g00079 307 Pfam Major intrinsic protein 72 279 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium3868g00079 307 CDD MIP 74 282 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium3868g00079 307 MobiDBLite consensus disorder prediction 287 307 - -
Vium3868g00079 307 SUPERFAMILY Aquaporin-like 71 290 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3868g00079 Vium-Chr3868 358505 363129 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3868g00079 1 288 Major Intrinsic Protein MIP AT1G80760 73.469 6.69e-150 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3868g00079 K09874 - gmx:100798410 517.309