Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3868g00074 ATGCCAACTGACACGTCATCATTTTCCGGTGAAACCGTCTGCGTGACCGGCGCCGGCGGGTACATAGCTTCTTGGCTTGTGAAGGTTCTGTTAGAGAAAGGTTACACTGTGAGAGGAACCGTTCGAAACCCAGAGGATCCGAAGAATGGTCATTTGAAGAAGTTGGAAGGAGCGAAGGAGAGACTCACTCTGCATAAAGTTGATCTCTTTGATATTGATTCCATTAAAGCTGCTTTTCACGGTTGCCACGGCGTCTTCCACACCGCTTCTCCGGTCACCGACAACCCCGAAGAGATGGTGGAGCCAGCAGTGAATGGAACGAAGAATGTGATAATAGCAGCTGCAGAAGCAAAAGTGCGGCGCGTGGTGTTCACTTCGTCAATTGGCACGGTGTATATGAACCCTAACACGAGTAGGGATGTGGTGGTTGATGAATCATTCTGGAGTGATTTGGAGTACTGCAAGAACACCAAGAATTGGTACTGCTATGGGAAGACGGTGGCTGAACAATCAGCATGGGATATAGCTAAAGAAAGAGGGGTGGATTTGGTTGTGGTGAACCCAGTTGTGGTTATTGGTCCATTGCTTCAACCTACCATTAATGCTAGCACAATTCACATCCTGAAGTACCTTACTGGCTCTGCTAAGACCTATGTAAATGCCACACAGTCTTATGTACACGTTAAGGATGTCGCACTAGCCCATGTTCTTGTGTATGAGACTCCTTCAGCTTCTGGTCGATACATATGTGCCGAAAGTTCACTGCATCGTGGTGACCTCGTTGAAATTTTGGGCAAGTTTTTCCCAGAGTACCCAATTCCCACCAAATGTTCAGATGAAAAGAACCCGAGAGTAAAACCTTATATGTTTTCAAACCAAAAGCTGAAAGATTTGGGAATGGAATTCACCCCAGTGAAACAGAGTCTATATGACACAGTTAAAAATCTGCAAGACAATGGCCACCTTCCTGTGCTCCCAAAGCAAGAAAACTCCTATTGA 999 0.4605 MPTDTSSFSGETVCVTGAGGYIASWLVKVLLEKGYTVRGTVRNPEDPKNGHLKKLEGAKERLTLHKVDLFDIDSIKAAFHGCHGVFHTASPVTDNPEEMVEPAVNGTKNVIIAAAEAKVRRVVFTSSIGTVYMNPNTSRDVVVDESFWSDLEYCKNTKNWYCYGKTVAEQSAWDIAKERGVDLVVVNPVVVIGPLLQPTINASTIHILKYLTGSAKTYVNATQSYVHVKDVALAHVLVYETPSASGRYICAESSLHRGDLVEILGKFFPEYPIPTKCSDEKNPRVKPYMFSNQKLKDLGMEFTPVKQSLYDTVKNLQDNGHLPVLPKQENSY 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3868g00074 332 CDD FR_SDR_e 13 299 - -
Vium3868g00074 332 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 11 313 - -
Vium3868g00074 332 Pfam NAD dependent epimerase/dehydratase family 13 244 IPR001509 -
Vium3868g00074 332 FunFam Cinnamoyl-CoA reductase 1 4 332 - -
Vium3868g00074 332 Gene3D - 11 332 - -
Vium3868g00074 332 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 316 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3868g00074 Vium-Chr3868 328441 330502 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3868g00074 10 276 Monolignol Biosynthesis Gene Families AT1G80820 73.783 1.76e-142 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3868g00074 K09753 - gmx:100811528 620.928