Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3868g00073 ATGGCTGCTAATCTTGGGGTTGTCACTGGAATGCATCTAGCTGAGCATTGTAGAGCTGAATATTCTCGACTGCCCAACTTCATCCTTTGGGTGATTGCTGAAATTGCCATTGTGGCCTGTGACATTCCTGAAGTAATTGGAACGGCCTTTGCATTGAACATGCTCTTCAACATACCTGTTTGGATTGGTGTTCTTCTGACAGGACTCAGTACATTGGTCCTCTTAGCATTACAGCAATATGGGGTTAGGAAACTTGAATTCTTCATTGCATTTCTAGTATTTACAATTGCTGGTTGCTTTATGGCTGAGCTTGGATACGCAAAGCCTGTGGCCAAAGAAGTTGTGACAGGTCTATTTGTTCCAAAACTTAATGGGAATGGTGCCACTGGTCTAGCAATTTCACTGCTTGGGGCAATGGTTATGCCACACAATCTCTTCCTCCACTCAGCTCTGGTGCTTTCCAGGAAAATACCCCGATCAGTTCGTGGAATCAAAGAGGCTTGCAGATTTTACATGATAGAAAGTGCTTTTGCTCTTATGGTTGCCTTCCTCATAAATATTTCCGTTATTTCTGTAAGTGGTGCAGTTTGCCATTCTTCAAACTTAAGTGCTGAAGATCAGAAAAGTTGTGAGGATTTGGATTTGAACAAAGCCTCCTTTTTATTAAGAAATGTGTTGGGCAAATGGAGTTCAAAACTATTTGCAATTGCTTTGCTTGCCTCAGGTCAAAGTTCTACCATAACAGGAACATATGCAGGGCAATACGTCATGCAGGGATTTCTTGATTTGCGACTGAAGTCATGGATTCGGAATTTGCTAACCCGTTGCATAGCCATTGTTCCTAGTTTGATTGTTGCACTCATAGGTGGCTCTGCTGGAGCTGGAGAGCTCATCATAATTGCATCGATGATCTTATCATTTGAACTTCCTTTTGCTCTGATTCCACTCCTCAAGTTCACTAGCAGCAAAATCAAGATGGGAGAACATGTCAACTCAATCACGATTTCGGCTGTTACTTGGATCATTGGTTCCCTCATCATGGGCATAAACATATACTATTTAATGACTAGCTTTGTGAAGTTGCTTCTTCATGCTCACTTAAGAATTGTGGCTAAGGTATTTCTGGGGATATTAGGATTTTCTGGTGTGGCACTGTACATTGGAGGCATTGCATATTTGGCGTTTCGCAAAAATAAAAAGACTACACATATTTTGACACTTAGAACATTGGAAGATCAGCAAATGGGTAATGCAGAAAATGATGTATCAATGTATAGTCTGCCAAGAGAAGACATAGTAAGCATGCAATTGCCTCAAAAAAGGAGTCCTGCAGAATTTGATTAA 1344 0.41 MAANLGVVTGMHLAEHCRAEYSRLPNFILWVIAEIAIVACDIPEVIGTAFALNMLFNIPVWIGVLLTGLSTLVLLALQQYGVRKLEFFIAFLVFTIAGCFMAELGYAKPVAKEVVTGLFVPKLNGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRGIKEACRFYMIESAFALMVAFLINISVISVSGAVCHSSNLSAEDQKSCEDLDLNKASFLLRNVLGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKSWIRNLLTRCIAIVPSLIVALIGGSAGAGELIIIASMILSFELPFALIPLLKFTSSKIKMGEHVNSITISAVTWIIGSLIMGINIYYLMTSFVKLLLHAHLRIVAKVFLGILGFSGVALYIGGIAYLAFRKNKKTTHILTLRTLEDQQMGNAENDVSMYSLPREDIVSMQLPQKRSPAEFD 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3868g00073 447 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 2 324 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium3868g00073 447 NCBIfam Nramp family divalent metal transporter 3 323 - -
Vium3868g00073 447 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 1 400 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium3868g00073 447 Pfam Natural resistance-associated macrophage protein 1 332 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium3868g00073 447 PRINTS Natural resistance-associated macrophage protein signature 132 155 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium3868g00073 447 PRINTS Natural resistance-associated macrophage protein signature 82 103 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium3868g00073 447 PRINTS Natural resistance-associated macrophage protein signature 302 321 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium3868g00073 447 PRINTS Natural resistance-associated macrophage protein signature 57 76 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium3868g00073 447 PRINTS Natural resistance-associated macrophage protein signature 29 55 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium3868g00073 447 PRINTS Natural resistance-associated macrophage protein signature 242 261 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium3868g00073 447 PRINTS Natural resistance-associated macrophage protein signature 270 287 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3868g00073 Vium-Chr3868 321944 326073 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3868g00073 1 440 Inorganic Solute Cotransporters AT1G15960 77.828 0.0 708
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3868g00073 K21398 - gmx:100815628 802.357