Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3868g00071 ATGGATCCGCAGAACGAATCCGACCAAGCAAACCCCAGAAACATAATTTTCAGTAAATACGAGATGGGGCGGGTGCTGGGGCAGGGAAACTTCGCGAAGGTCTACTACGGCAGAAACCTCGTCACCAACGACAACGTCGCCGTCAAGGTCATAAAGAAAGAGAAGCTGAAGAAAGAGCGACTGGTGAAGCAGATCAAGCGCGAGGTTTCTGTCATGAAACTGGTGCGGCATCCCCACATCGTTCAACTCAAGGAAGTCATGGCCACCAAAGGAAAAATCTTCCTCGTCATGGAATACGTTAAGGGCGGCGAGCTTTTCACCAAAGTCAACAAAGGAAAACTCTCCGAAGACCTCGCCAGAAAGTACTTCCAGCAACTCGTCAGCGCCGTCGACTACTGCCACAGCCGCGGCGTCACCCACCGCGACCTCAAGCCGGAGAATCTCCTCTTGGACCAGAACGAGGACCTCAAAGTCTCCGACTTTGGACTCTCGGCGCTGCCGGAGCAGCGCCGCGCCGACGGCATGCTATTAACGCCGTGTGGGACCCCTGCTTACGTGGCGCCGGAGGTTCTGAAGAAAAAGGGCTACGACGGTTCAAAGGCTGATATATGGTCCTGTGGGGTAATTCTTTACGCCTTGCTCTGCGGCTATTTACCCTTCCAAGGTGAGAACGTTATGAGAATCTACCGAAAAGCGTTCAGAGCTCAGTATGAATTACCCGAATGGGTTTCGTCGCAGGCCAAGAATCTCATTTCGAATCTCCTCGTTGCTGATCCTGCCAAGAGGTATTCCATTCCCGATATAATGAAGGATCCCTGGTTTCAATTCGGGTTCATGAGACCCATTGCCTTTTCGATTAAGGAATCCGAGGTAGAAGACAACATTGATTTCGAAGACGTGTACAACAACGAGGACGAGGTCTCGATGAGGAAGCCCGCGAGGCCGTTTTACAATGCGTTTGAGATAATCTCGTCCTTGTCGCACGGGTTTGATCTCAGGAGTTTGTTTGAGACGAGGAAGCGGTCGCCGTCTATGTTCATCTGTAAATTTTCGGCTTCGGCGGTGATGGCGAAGGTGGAGGCTGCTGCAAAGAAGCTGAATTTTAAAGTGACGGGGAAGAAGGAGTTCGTGGTGAGGATGCAGGGGGCGGAAGAGGGGAGGAAGGGGAAGTTGGGGATGACGGTGGAGGTTTTCGAGGTGGCGCCGGAGGTGGCGGTGGTTGAGTTTTCAAAGTCTGCCGGCGACACTTTGGAGTATATTAAACTGTGTGAGGAACAAATAAGACCGTCTCTGAAAGACGTTGTTTGGAGCTGGCAGGGTGATAGCAATAATTAG 1335 0.5184 MDPQNESDQANPRNIIFSKYEMGRVLGQGNFAKVYYGRNLVTNDNVAVKVIKKEKLKKERLVKQIKREVSVMKLVRHPHIVQLKEVMATKGKIFLVMEYVKGGELFTKVNKGKLSEDLARKYFQQLVSAVDYCHSRGVTHRDLKPENLLLDQNEDLKVSDFGLSALPEQRRADGMLLTPCGTPAYVAPEVLKKKGYDGSKADIWSCGVILYALLCGYLPFQGENVMRIYRKAFRAQYELPEWVSSQAKNLISNLLVADPAKRYSIPDIMKDPWFQFGFMRPIAFSIKESEVEDNIDFEDVYNNEDEVSMRKPARPFYNAFEIISSLSHGFDLRSLFETRKRSPSMFICKFSASAVMAKVEAAAKKLNFKVTGKKEFVVRMQGAEEGRKGKLGMTVEVFEVAPEVAVVEFSKSAGDTLEYIKLCEEQIRPSLKDVVWSWQGDSNN 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3868g00071 444 Coils Coil 48 68 - -
Vium3868g00071 444 Gene3D Transferase(Phosphotransferase) domain 1 12 319 - -
Vium3868g00071 444 Gene3D Kinase associated domain 1, KA1 320 437 - -
Vium3868g00071 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Vium3868g00071 444 CDD CIPK_C 318 432 - -
Vium3868g00071 444 ProSitePatterns Protein kinases ATP-binding region signature. 26 53 IPR017441 GO:0005524
Vium3868g00071 444 ProSiteProfiles Protein kinase domain profile. 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3868g00071 444 Pfam Protein kinase domain 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3868g00071 444 FunFam Non-specific serine/threonine protein kinase 313 436 - -
Vium3868g00071 444 FunFam Non-specific serine/threonine protein kinase 11 99 - -
Vium3868g00071 444 FunFam Non-specific serine/threonine protein kinase 13 313 - -
Vium3868g00071 444 ProSiteProfiles NAF domain profile. 312 337 IPR018451 GO:0007165
Vium3868g00071 444 SUPERFAMILY Protein kinase-like (PK-like) 16 311 IPR011009 -
Vium3868g00071 444 Pfam NAF domain 316 371 IPR004041 GO:0007165
Vium3868g00071 444 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 9 432 - -
Vium3868g00071 444 SMART serkin_6 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3868g00071 Vium-Chr3868 308066 309932 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3868g00071 3 444 CBL-interacting serine-threonine protein kinases AT5G25110 60.497 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vium3868g00071 Pkinase 5.7e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3868g00071 - - vun:114167214 799.275