Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3868g00070 ATGTGGTTTCAGATTGTGAAAGATGGGTACCAGTGGAGGAAATATGGGCTAAAAGTGACCAGAGATAACCCTTGTCCAAGAGATTTCAAATGCTCTTTTGCTCCAAGCTGCCCTCTAAAAAAGAAGGTGCAAAGAAGATTGGATGATCAATCTGTTCTAGTGGCTACTTATGAAGGGGAGCACAACCATCCCCAAGCTTCTTCACAAATGGAGGCAACATCAGGTTCTGGGCGAAGTGTGACCCTTGCTTCAGTGCCTTGTGCAGCTGCCACTCCAACACTAATTACCCTTGACTTGACAAAATCTAAGAGCAGCAACGATTCCAAGAGCACGAAAACTAAAGTAGATACACCTAAAGTGCAGCAGGTTTTGGTGGAACAGATGGCAACTTCTTTGACCACGGATCCTAATTTCAGAGCAGCACTTGTTGCTGCCATCTCAGGAAGATTGTTGCACATATAA 462 0.4459 MWFQIVKDGYQWRKYGLKVTRDNPCPRAXFKCSFAPSCPLKKKVQRRLDDQSVLVATYEGEHNHPQASSQMEATSGSGRSVTLASVPCAAATPTLITLDLTKSKSSNDSKSTKTKVDTPKVQQVLVEQMATSLTTDPNFRAALVAAISGRLLHI 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3868g00070 154 ProSiteProfiles WRKY domain profile. 5 67 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium3868g00070 154 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 5 150 IPR044810 GO:0003700
Vium3868g00070 154 Gene3D WRKY domain 3 67 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium3868g00070 154 SMART WRKY_cls 6 66 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium3868g00070 154 Pfam WRKY DNA -binding domain 7 65 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium3868g00070 154 SUPERFAMILY WRKY DNA-binding domain 4 66 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3868g00070 Vium-Chr3868 304599 305124 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3868g00070 5 153 WRKY Transcription Factor Family AT1G80840 56.688 5.79e-55 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium3868g00070 WRKY 3.7e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3868g00070 - - gmx:100807966 248.825