Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3868g00068 ATGGATTGTTCATCATGGATCAACACTTCCTTGGATCTCAACATTAACCCACGCAGAGTTCATCGAGAACTTCCCAAGGAGGTAGAAAGCAAGCTTTTTTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAATGTTGGGAATCTAAAAGACCCATCAAAGATGAGTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGACAGCAGAAAACAAGAAGTTGGCTGAAATGCTGTCGGTGGTGTGTGAGAACTACAACACTTTGCGAAGCCATTTGATGGAATATACGAGGAAAAATGGTGAAAAAGAGACCAGCCCGACATCAAAGAAAAGGAAGTCTGAAAGCAGCAACAACAATAGTATTTGTGTGATGGGAACTAATAATGGAAACTCCGAGAGCAGTTCCACTGATGAAGAATCTTGCAAGAAACCGAGGGAAGAAACCATGAAACCAAAAATTTCAAGAGTTTATGTCAGGACCGAAGCATCTGACACCACCCTTATTGTGAAAGATGGGTACCAGTGGAGGAAGTATGGGCAAAAAGTGACCAGAGATAACCCATGTCCAAGAGCATATTTCAAATGCTCTTTTGCTCCAAGCTGCCCTGTAAAAAAGAAGGTGCAAAGAAGTGTGGATGATCAATCTGTTCTGGTTGCTACTTATGAAGGGGAGCACAACCATCCCCAAGCTTCTTCACAAATGGAGGCAACATCAGGTTCTGGGCGTAGTGTGACCCTTGCTTCAGTGCCTTGTGCAGCTGCCACTCCAACACTTGTTACCCTTGACTTGACAAAATCTAAGGGCAGCAACGATTCCAAGAGCACGAAAACTAAAGTAGATACACCTAAAGTGCAGCAGGTTTTGGTGGAACAGATGGCAACTTCTTTGACCACGGATCCTAATTTCAGAGCAGCACTTGTTGCTGCCATCTCAGGAAGATTGTTGCACAATAATTGA 957 0.4399 MDCSSWINTSLDLNINPRRVHRELPKEVESKLFSLGMPKFNVEECWESKRPIKDESTSDLEEELKRVTAENKKLAEMLSVVCENYNTLRSHLMEYTRKNGEKETSPTSKKRKSESSNNNSICVMGTNNGNSESSSTDEESCKKPREETMKPKISRVYVRTEASDTTLIVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPSCPVKKKVQRSVDDQSVLVATYEGEHNHPQASSQMEATSGSGRSVTLASVPCAAATPTLVTLDLTKSKGSNDSKSTKTKVDTPKVQQVLVEQMATSLTTDPNFRAALVAAISGRLLHNN 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3868g00068 318 MobiDBLite consensus disorder prediction 95 148 - -
Vium3868g00068 318 MobiDBLite consensus disorder prediction 95 110 - -
Vium3868g00068 318 Coils Coil 57 77 - -
Vium3868g00068 318 Gene3D WRKY domain 153 230 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium3868g00068 318 SMART WRKY_cls 169 229 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium3868g00068 318 Pfam WRKY DNA -binding domain 170 228 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium3868g00068 318 MobiDBLite consensus disorder prediction 111 135 - -
Vium3868g00068 318 SUPERFAMILY WRKY DNA-binding domain 165 229 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium3868g00068 318 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 51 314 IPR044810 GO:0003700
Vium3868g00068 318 ProSiteProfiles WRKY domain profile. 164 230 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium3868g00068 318 FunFam WRKY transcription factor 40 154 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3868g00068 Vium-Chr3868 288866 290917 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3868g00068 4 318 WRKY Transcription Factor Family AT1G80840 52.888 7.28e-100 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium3868g00068 WRKY 3.8e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3868g00068 - - gmx:100807966 527.324