Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3868g00067 ATGGATTGTTCATCATGGATCAACACTTCCTTGGATCTCAACATTAACCCACGCAGAGTTCATCGAGAACTTCCCGAGGTAGAAAGCAAGCTTTTTTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAATGTTGGGAATCTAAAAGACCCATCAAAGATGAGTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGACAGCAGAAAACAAGAAGTTGGCTGAAATGCTGTCGGTGGTGTGTGAGAACTACAACACTTTGCGAAGCCATTTGATGGAATATACGAGGAAAAATGGTGAAAAAGAGACCAGCCCGACATCAAAGAAAAGGAAGTCTGAAAGCAGCAACAACAATAGTATTTGTGTGATGGGAACTAATAATGGAAACTCCGAGAGCAGTTCCACTGATGAAGAATCTTGCAAGAAACCGAGGGAAGAAACCATGAAACCAAAAATTTCAAGAGTTTATGTCAGGACCGAAGCATCTGACACCACCCTTATTGTGAAAGATGGGTACCAGTGGAGGAAGTATGGGCAAAAAGTGACCAGAGATAACCCATGTCCAAGAGCATATTTCAAATGCTCTTTTGCTCCAAGCTGCCCTGTAAAAAAGAAGGTGCAAAGAAGTGTGGATGATCAATCTGTTCTGGTTGCTACTTATGAAGGGGAGCACAACCATCCCCAAGCTTCTTCACAAATGGAGGCAACATCAGGTTCTGGGCGTAGTGTGACCCTTGCTTCAGTGCCTTGTGCAGCTGCCACTCCAACACTTGTTACCCTTGACTTGACAAAATCTAAGGGCAGCAACGATTCCAAGAGCACGAAAACTAAAGTAGATACACCTAAAGTGCAGCAGGTTTTGGTGGAACAGATGGCAACTTCTTTGACCACGGATCCTAATTTCAGAGCAGCACTTGTTGCTGCCATCTCAGGAAGATTGTTGCACAATAATTGA 954 0.4403 MDCSSWINTSLDLNINPRRVHRELPEVESKLFSLGMPKFNVEECWESKRPIKDESTSDLEEELKRVTAENKKLAEMLSVVCENYNTLRSHLMEYTRKNGEKETSPTSKKRKSESSNNNSICVMGTNNGNSESSSTDEESCKKPREETMKPKISRVYVRTEASDTTLIVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPSCPVKKKVQRSVDDQSVLVATYEGEHNHPQASSQMEATSGSGRSVTLASVPCAAATPTLVTLDLTKSKGSNDSKSTKTKVDTPKVQQVLVEQMATSLTTDPNFRAALVAAISGRLLHNN 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3868g00067 317 MobiDBLite consensus disorder prediction 110 134 - -
Vium3868g00067 317 FunFam WRKY transcription factor 40 153 230 - -
Vium3868g00067 317 SMART WRKY_cls 168 228 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium3868g00067 317 Gene3D WRKY domain 152 229 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium3868g00067 317 Pfam WRKY DNA -binding domain 169 227 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium3868g00067 317 SUPERFAMILY WRKY DNA-binding domain 164 228 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium3868g00067 317 MobiDBLite consensus disorder prediction 94 147 - -
Vium3868g00067 317 MobiDBLite consensus disorder prediction 94 109 - -
Vium3868g00067 317 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 51 313 IPR044810 GO:0003700
Vium3868g00067 317 ProSiteProfiles WRKY domain profile. 163 229 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium3868g00067 317 Coils Coil 56 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3868g00067 Vium-Chr3868 288866 290919 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3868g00067 4 317 WRKY Transcription Factor Family AT1G80840 53.049 4.45e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium3868g00067 WRKY 3.7e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3868g00067 - - gmx:100170678 521.161