LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium3868g00060	ATGTTTGACTCTGGTTACAAGTCACAGTATATTGGAGGCCAGAAGGAGAAGTTCGTAAGGTTGGATGATCTGGATTCGAATTTGTCGTATCAATCAAGCTCAAGTGGGATGAAAAAATTAAGATTCAATTTAGATTCTCTGCCAATTCCTGGTCGTGGAAGAAAAAGAGCATCGAAATCGTTTAAGCTAGGAGTGAAGAAGGGTTCGGATGGACTAAAAACATTTGGAAGATCACTCAAGAGTGGGGTGACTACATGGGCAGTGTTCCCTGAAGACCTTAAAGTTTCAGAGAAAAAAGTGTTTGATCCTCAAGACAAGAACCTTCTGTATTGGAACAAGTTTTTTGAGATTCTATGCATTTTTTCTGTGGCTTGTGATCCCTTCTTCTTTTATCTTCCTTATTTCAACCACAAATCATTTTGCCTCGCCATAGACAATGAGCTAGCAAGTTTTGCTGTCACATTGAGAACAATATGCGATGCCGTTTATCTTATCCGCATAAGTTTTCAGTTCCGCACTGCTTACATCGCACCATCATCTCGGGTATTTGGACGAGGTGAACTTGTCATAGATCCTACACAGATTGCCAAGAGATACTTACGACGTTATTTCATCATTGACTTCGTTTCTGTGCTCCCTATACCACAGATTGTAGTGTGGAAATATCTTTACAGATCAGGACGTGTAAAGGTCTTGGAAACAAAAACGTTACTGCTAAGAATTGTGATTCTGCAATATTTTCCAAGATTTATACGTTTTTTACCTTTAGCTTCTGAAGTTAAAAAGACAGCTGGTGTTTTTTCTGAGAACGCACTGCTCGGGGCCATGTACTATTTGATATGGTATATGCTTGCTAGTCACATAACTGGCTCTTGCTGGTACTTACTAGCCATTGAACGTAATGACACCTGCTGGAAGAATGCTTGTAGAGCAGTTGAAGGGTGCAATATACATTTCTTGTACTGTGCGAATTCGAACAAGCGTATGCCAGGGTATGACACTTGGAGAAATGTTAGCGAAACTGTTCTGAAAAGTCAGTGCTATGTGGAGGATGGTTCCTCAGAATTTAGCTATGGCATCTTCTCTCAAGCTATAGAGTCTGATATTGTTGCTTCCATAGAAGTTTTTCCTAAGTTCTGTTACTGTTTATGGTGGGGTCTTCAAAACTTGAGTACACTTGGTCAGGGGCTTCTAACCAGTACATACCCAACAGAGGTTATGTTTTCCATAGTAATAGCTATCATGGGGCTTATCCTTTTTGCTCTTCTGATCGGAAACATGCAGACCTACCTTCAATCGATGTCAGTTCGTCTTGAGGAAATGAGGATCAAAAGACGTGATTCTGAGCAATGGATGCATCATCGTTTGCTTCCTCCAGAACTAAGGGAAAGAGTGAGACGCTATGACCAATACAAGTGGCTGAACACCCGTGGAGTAGATGAAGAGAGCATAGTTCAGAGTCTTCCAAAAGATCTCAGGAGAGATATCAAACGGCATCTTTGTTTGAATTTAGTCAGAAGGGTTCCTCTCTTTGCCAACATGGATGAACGTTTGCTTGATGCTATATGTGAGCGATTGAAGCCTAGTTTATATACAGAGGGAACTTACATAGTGAGGGAAGGGGACCCAGTTAATGAGATGCACTTCATCATACGTGGGCGTCTAGAGAGTGTCACCACAGATGGTGGAAGAAGTGGGTTCTTCAACAGAGGTCTTCTGAAGGAAAATGACTTCTGTGGAGAGGAGCTACTAACGTGGGCATTGGACCCCAAATCAGGTGCTAACTTGCCATCATCAACAAGAACTGTGAAGGCTATAAATGAGGTGGAGGCATTTGCTTTGGAAGCAGAGGAGTTGAAGTTTGTTGCTTCCCAGTTTAGGCACATCCACAGCAGACAGGTTCAGCACACCTTCCGTTTCTATTCACAGCAGTGGAGAACATGGGCTGCTATCTACATTCAAGCTGCATGGAGGCGGCATTGCAGGAGAAAGATAGCAGAACAGCGCAGGAGGGAGGAAGAAGAATTATATGACTCTGATTATGACAACAGTGATGATTCTGCAAAAGCCTTGGTCAAGCATTCTGAAAAGGCTGATTTTCCTTCTTCTAACCTTGGACTTGCTACAACCGTCTATGCATCTCGCTTTGCTGCAAATGCACTTCGTGGTCATAGGCGTCGTGATTCAAGTTCCAAGGACATACTCAAACTCCAAAAGCCCCCAGAACCTGACTTCAGTGATTATGATGAAAACTGA	2256	0.4242	MFDSGYKSQYIGGQKEKFVRLDDLDSNLSYQSSSSGMKKLRFNLDSLPIPGRGRKRASKSFKLGVKKGSDGLKTFGRSLKSGVTTWAVFPEDLKVSEKKVFDPQDKNLLYWNKFFEILCIFSVACDPFFFYLPYFNHKSFCLAIDNELASFAVTLRTICDAVYLIRISFQFRTAYIAPSSRVFGRGELVIDPTQIAKRYLRRYFIIDFVSVLPIPQIVVWKYLYRSGRVKVLETKTLLLRIVILQYFPRFIRFLPLASEVKKTAGVFSENALLGAMYYLIWYMLASHITGSCWYLLAIERNDTCWKNACRAVEGCNIHFLYCANSNKRMPGYDTWRNVSETVLKSQCYVEDGSSEFSYGIFSQAIESDIVASIEVFPKFCYCLWWGLQNLSTLGQGLLTSTYPTEVMFSIVIAIMGLILFALLIGNMQTYLQSMSVRLEEMRIKRRDSEQWMHHRLLPPELRERVRRYDQYKWLNTRGVDEESIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEGTYIVREGDPVNEMHFIIRGRLESVTTDGGRSGFFNRGLLKENDFCGEELLTWALDPKSGANLPSSTRTVKAINEVEAFALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRRHCRRKIAEQRRREEEELYDSDYDNSDDSAKALVKHSEKADFPSSNLGLATTVYASRFAANALRGHRRRDSSSKDILKLQKPPEPDFSDYDEN	751

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium3868g00060	751	FunFam	Cyclic nucleotide-gated ion channel 1	508	626	-	-
	Vium3868g00060	751	ProSiteProfiles	cAMP/cGMP binding motif profile.	510	640	IPR000595	-
	Vium3868g00060	751	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	92	745	-	-
	Vium3868g00060	751	Gene3D	-	113	435	-	-
	Vium3868g00060	751	ProSiteProfiles	IQ motif profile.	646	675	IPR000048	GO:0005515
	Vium3868g00060	751	Gene3D	Jelly Rolls	508	628	IPR014710	-
	Vium3868g00060	751	SUPERFAMILY	Voltage-gated potassium channels	103	432	-	-
	Vium3868g00060	751	SUPERFAMILY	cAMP-binding domain-like	440	630	IPR018490	-
	Vium3868g00060	751	CDD	CAP_ED	510	641	IPR000595	-
	Vium3868g00060	751	MobiDBLite	consensus disorder prediction	721	751	-	-
	Vium3868g00060	751	SMART	cnmp_10	510	641	IPR000595	-
	Vium3868g00060	751	Pfam	Ion transport protein	110	437	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Vium3868g00060	751	FunFam	Cyclic nucleotide-gated ion channel 1	437	501	-	-
	Vium3868g00060	751	Gene3D	Helix hairpin bin	437	501	-	-
	Vium3868g00060	751	Pfam	Cyclic nucleotide-binding domain	531	620	IPR000595	-
	Vium3868g00060	751	MobiDBLite	consensus disorder prediction	721	745	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium3868g00060	Vium-Chr3868	252739	256122	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium3868g00060	6	745	Ion Channels	AT1G15990	67.952	0.0	1003

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium3868g00060	K05391		-	gmx:100810453	1314.29