Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3868g00059 ATGTTTGACTCTGGTTACAAGTCACAGTATATTGGAGGCCAGAAGGAGAAGTTCGTAAGGTTGGATGATCTGGATTCGAATTTGTCGTATCAATCAAGCTCAAGTGGGATGAAAAAATTAAGATTCAATTTAGATTCTCTGCCAATTCCTGGTCGTGGAAGAAAAAGAGCATCGAAATCGTTTAAGCTAGGAGTGAAGAAGGGTTCGGATGGACTAAAAACATTTGGAAGATCACTCAAGAGTGGGGTGACTACATGGGCAGTGTTCCCTGAAGACCTTAAAGTTTCAGAGAAAAAAGTGTTTGATCCTCAAGACAAGAACCTTCTGTATTGGAACAAGTTTTTTGAGATTCTATGCATTTTTTCTGTGGCTTGTGATCCCTTCTTCTTTTATCTTCCTTATTTCAACCACAAATCATTTTGCCTCGCCATAGACAATGAGCTAGCAAGTTTTGCTGTCACATTGAGAACAATATGCGATGCCGTTTATCTTATCCGCATAAGTTTTCAGTTCCGCACTGCTTACATCGCACCATCATCTCGGGTATTTGGACGAGGTGAACTTGTCATAGATCCTACACAGATTGCCAAGAGATACTTACGACGTTATTTCATCATTGACTTCGTTTCTGTGCTCCCTATACCACAGATTGTAGTGTGGAAATATCTTTACAGATCAGGACGTGTAAAGGTCTTGGAAACAAAAACGTTACTGCTAAGAATTGTGATTCTGCAATATTTTCCAAGATTTATACGTTTTTTACCTTTAGCTTCTGAAGTTAAAAAGACAGCTGGTGTTTTTTCTGAGAACGCACTGCTCGGGGCCATGTACTATTTGATATGGTATATGCTTGCTAGTCACGTAAGTTCAACTCTTGGATATAGCAAACTAAATCGTCTCCTTCATTCTTCTGACAATTCTCCAATGTCACAGATAACTGGCTCTTGCTGGTACTTACTAGCCATTGAACGTAATGACACCTGCTGGAAGAATGCTTGTAGAGCAGTTGAAGGGTGCAATATACATTTCTTGTACTGTGCGAATTCGAACAAGCGTATGCCAGGGTATGACACTTGGAGAAATGTTAGCGAAACTGTTCTGAAAAGTCAGTGCTATGTGGAGGATGGTTCCTCAGAATTTAGCTATGGCATCTTCTCTCAAGCTATAGAGTCTGATATTGTTGCTTCCATAGAAGTTTTTCCTAAGTTCTGTTACTGTTTATGGTGGGGTCTTCAAAACTTGAGTACACTTGGTCAGGGGCTTCTAACCAGTACATACCCAACAGAGGTTATGTTTTCCATAGTAATAGCTATCATGGGGCTTATCCTTTTTGCTCTTCTGATCGGAAACATGCAGACCTACCTTCAATCGATGTCAGTTCGTCTTGAGGAAATGAGGATCAAAAGACGTGATTCTGAGCAATGGATGCATCATCGTTTGCTTCCTCCAGAACTAAGGGAAAGAGTGAGACGCTATGACCAATACAAGTGGCTGAACACCCGTGGAGTAGATGAAGAGAGCATAGTTCAGAGTCTTCCAAAAGATCTCAGGAGAGATATCAAACGGCATCTTTGTTTGAATTTAGTCAGAAGGGTTCCTCTCTTTGCCAACATGGATGAACGTTTGCTTGATGCTATATGTGAGCGATTGAAGCCTAGTTTATATACAGAGGGAACTTACATAGTGAGGGAAGGGGACCCAGTTAATGAGATGCACTTCATCATACGTGGGCGTCTAGAGAGTGTCACCACAGATGGTGGAAGAAGTGGGTTCTTCAACAGAGGTCTTCTGAAGGAAAATGACTTCTGTGGAGAGGAGCTACTAACGTGGGCATTGGACCCCAAATCAGGTGCTAACTTGCCATCATCAACAAGAACTGTGAAGGCTATAAATGAGGTGGAGGCATTTGCTTTGGAAGCAGAGGAGTTGAAGTTTGTTGCTTCCCAGTTTAGGCACATCCACAGCAGACAGGTTCAGCACACCTTCCGTTTCTATTCACAGCAGTGGAGAACATGGGCTGCTATCTACATTCAAGCTGCATGGAGGCGGCATTGCAGGAGAAAGATAGCAGAACAGCGCAGGAGGGAGGAAGAAGAATTATATGACTCTGATTATGACAACAGTGATGATTCTGCAAAAGCCTTGGTCAAGCATTCTGAAAAGGCTGATTTTCCTTCTTCTAACCTTGGACTTGCTACAACCGTCTATGCATCTCGCTTTGCTGCAAATGCACTTCGTGGTCATAGGCGTCGTGATTCAAGTTCCAAGGACATACTCAAACTCCAAAAGCCCCCAGAACCTGACTTCAGTGATTATGATGAAAACTGA 2328 0.4227 MFDSGYKSQYIGGQKEKFVRLDDLDSNLSYQSSSSGMKKLRFNLDSLPIPGRGRKRASKSFKLGVKKGSDGLKTFGRSLKSGVTTWAVFPEDLKVSEKKVFDPQDKNLLYWNKFFEILCIFSVACDPFFFYLPYFNHKSFCLAIDNELASFAVTLRTICDAVYLIRISFQFRTAYIAPSSRVFGRGELVIDPTQIAKRYLRRYFIIDFVSVLPIPQIVVWKYLYRSGRVKVLETKTLLLRIVILQYFPRFIRFLPLASEVKKTAGVFSENALLGAMYYLIWYMLASHVSSTLGYSKLNRLLHSSDNSPMSQITGSCWYLLAIERNDTCWKNACRAVEGCNIHFLYCANSNKRMPGYDTWRNVSETVLKSQCYVEDGSSEFSYGIFSQAIESDIVASIEVFPKFCYCLWWGLQNLSTLGQGLLTSTYPTEVMFSIVIAIMGLILFALLIGNMQTYLQSMSVRLEEMRIKRRDSEQWMHHRLLPPELRERVRRYDQYKWLNTRGVDEESIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEGTYIVREGDPVNEMHFIIRGRLESVTTDGGRSGFFNRGLLKENDFCGEELLTWALDPKSGANLPSSTRTVKAINEVEAFALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRRHCRRKIAEQRRREEEELYDSDYDNSDDSAKALVKHSEKADFPSSNLGLATTVYASRFAANALRGHRRRDSSSKDILKLQKPPEPDFSDYDEN 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3868g00059 775 Gene3D Helix hairpin bin 461 525 - -
Vium3868g00059 775 FunFam Cyclic nucleotide-gated ion channel 1 461 525 - -
Vium3868g00059 775 MobiDBLite consensus disorder prediction 745 775 - -
Vium3868g00059 775 CDD CAP_ED 534 665 IPR000595 -
Vium3868g00059 775 FunFam Cyclic nucleotide-gated ion channel 1 532 650 - -
Vium3868g00059 775 SMART cnmp_10 534 665 IPR000595 -
Vium3868g00059 775 Gene3D - 113 459 - -
Vium3868g00059 775 SUPERFAMILY cAMP-binding domain-like 464 654 IPR018490 -
Vium3868g00059 775 Gene3D Jelly Rolls 532 652 IPR014710 -
Vium3868g00059 775 ProSiteProfiles cAMP/cGMP binding motif profile. 534 664 IPR000595 -
Vium3868g00059 775 ProSiteProfiles IQ motif profile. 670 699 IPR000048 GO:0005515
Vium3868g00059 775 MobiDBLite consensus disorder prediction 745 769 - -
Vium3868g00059 775 Pfam Ion transport protein 313 461 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vium3868g00059 775 Pfam Ion transport protein 110 288 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vium3868g00059 775 SUPERFAMILY Voltage-gated potassium channels 103 456 - -
Vium3868g00059 775 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 310 769 - -
Vium3868g00059 775 Pfam Cyclic nucleotide-binding domain 555 644 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3868g00059 Vium-Chr3868 252739 256122 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3868g00059 6 769 Ion Channels AT1G15990 65.851 0.0 991
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3868g00059 K05391 - gmx:100810453 1300.8