Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3868g00056 ATGTTTTATCCAATGAATAAATTTATATCACTTTACCGTTACCCGAAGTTAGTAATACAGCGAAGCAGAATTGTCCAACTTGTTTGGCCCAAACGCAATAATTGCTGTCCTTTACCCTTCACCTCTGTTTCTAATACTACACAGAGCACAGAACAGAGCACAACAGAGATGAAAGGCTCATGGAAACTCCGATGTGCCCTCTTGCTACTCATCTCCGCCGTAGCCACCGCCACCGACCACATTGTCGGTGCCAATCGTGGGTGGAACCCTGGCCTCAACTACACTCTCTGGGCCAACAACCACACTTTCTACGTCGGCGACCTTATCTCATTCAGGTACCAGAAAAACCAATACAATGTGTTTGAGGTGAACCAAACTGGGTATGACAACTGCACCACTGAAGGGGCGGTCGGAAATTGGAGCAGTGGAAAGGATTTCATACCCCTGAACAAGGCCAAGAGATATTACTTCATTTGTGGAAATGGCCAATGCTTCAGTGGAATGAAGGTGTCTGTTATTGTGCATCCTCTTCCTCCACCTCCCACCTCTGCAATTTCTGCTGAACATTCAACGTCACATTCTGCTTCTCCTCTGCTTTTCAAACGCTCTCTGTTACTGTCTTCTCTTTTCGCTTGCTTTGGATTTCTCTTGATGTAG 657 0.4597 MFYPMNKFISLYRYPKLVIQRSRIVQLVWPKRNNCCPLPFTSVSNTTQSTEQSTTEMKGSWKLRCALLLLISAVATATDHIVGANRGWNPGLNYTLWANNHTFYVGDLISFRYQKNQYNVFEVNQTGYDNCTTEGAVGNWSSGKDFIPLNKAKRYYFICGNGQCFSGMKVSVIVHPLPPPPTSAISAEHSTSHSASPLLFKRSLLLSSLFACFGFLLM 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3868g00056 218 PANTHER BLUE COPPER PROTEIN 76 184 IPR039391 GO:0009055
Vium3868g00056 218 FunFam Lamin-like protein 76 177 - -
Vium3868g00056 218 ProSiteProfiles Phytocyanin domain profile. 78 176 IPR003245 GO:0009055
Vium3868g00056 218 Pfam Plastocyanin-like domain 88 168 IPR003245 GO:0009055
Vium3868g00056 218 CDD Phytocyanin_like_1 78 174 - -
Vium3868g00056 218 Gene3D - 76 177 IPR008972 -
Vium3868g00056 218 SUPERFAMILY Cupredoxins 77 175 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3868g00056 Vium-Chr3868 244700 245787 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3868g00056 75 184 Phytocyanin Superfamily AT5G15350 46.429 1.31e-35 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3868g00056 - - vum:124835852 440.269