Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3868g00053 ATGATCATCAACGTGAAGGAATCGACGATGGTGCGGCCGGCGGAAGAGGGGGAGCGGCGGGTGGTGTGGAACTCGAACGTGGACCTGGTGGTGCCGAATTTCCACACGCCCAGCGTCTACTTCTACAGAGCGAACGGCGTGTCCAACTTTTTCGAGGGGAAGGTTCTGAAGGAGGCACTGAGCAAGGTGCTGGTGCCCTTCTACCCAATGGCTGGGAGGCTCCGGCGAGACGAAGACGGTCGCGTGGAGATTGACTGCGACGGTCAGGGGGTTCTCTTCGTGGAGGCCGACACCGGCGCCGTCATCGACGACTTCGGGGACTTTGCACCGACCCTTGAGCTCCGGCAGCTCATCCCCGCCGTGGATTATTCGCAAGGGATCGAAACCTATCCCCTCTTGGTGTTACAGGTAACACACTTCAAATGTGGAGGGGCATCACTTGGAGTTGGTATGCAGCATCATGTAGCAGATGGAGCCTCTGGTCTTCATTTCATCAATACATGGTCTGATGTGGCTCGTGGCTTGGATGTATCCATTCCACCATTCATTGATAGAACAATACTTCGTGCGAGAGATCCACCTCGACCAGTTTTTGATCACATTGAATACAAGCCCCCACCAGCCATGAAAACTCAACCAGCCACAGAATCTGATACTGCAGCTGTCTCTATTTTCAAACTCACACGAGACCAGCTCTCCACCCTTAAAGCCAAGTCCAAAGAAGATGGCAACACAATCAACTACAGCTCTTATGAGATGTTGGCTGGACACGTTTGGAGAAGTGTCTGCAAAGCAAGAGCACTTCCTGAAGATCAAGAGACCAAATTGTACATTGCAACTGACGGAAGATCAAGGCTTCAACCTTCTCCTCCACCAGGTTACTTTGGCAATGTCATATTCACAACCACACCCATGGCTGTGGCAGGTGATCTCGTCTCAAAACCAACATGGTATGCTGCAAGCAGAATCCACAACGCATTGCTACGAATGGACAACGAATATTTGAGATCCGCTCTTGACTATCTAGAGCTGCAACCTGATCTCAAAGCTCTGGTTCGTGGTGCACACACTTTCAAATGTCCAAATCTTGGCATCACCAGCTGGACCAGGCTTCCAATCCATGATGCTGACTTTGGTTGGGGAAGGCCCATATTCATGGGTCCTGGTGGAATTGCATTCGAGGGTTTATCTTTCATAATCCCAAACTCCACCAATGATGGTAGCTTATCTGTCGCAATATCTCTTCAGCCCGACCATATGAAGCTGTTTAAGGAATACTTGTATGACATTTGA 1293 0.5043 MIINVKESTMVRPAEEGERRVVWNSNVDLVVPNFHTPSVYFYRANGVSNFFEGKVLKEALSKVLVPFYPMAGRLRRDEDGRVEIDCDGQGVLFVEADTGAVIDDFGDFAPTLELRQLIPAVDYSQGIETYPLLVLQVTHFKCGGASLGVGMQHHVADGASGLHFINTWSDVARGLDVSIPPFIDRTILRARDPPRPVFDHIEYKPPPAMKTQPATESDTAAVSIFKLTRDQLSTLKAKSKEDGNTINYSSYEMLAGHVWRSVCKARALPEDQETKLYIATDGRSRLQPSPPPGYFGNVIFTTTPMAVAGDLVSKPTWYAASRIHNALLRMDNEYLRSALDYLELQPDLKALVRGAHTFKCPNLGITSWTRLPIHDADFGWGRPIFMGPGGIAFEGLSFIIPNSTNDGSLSVAISLQPDHMKLFKEYLYDI 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3868g00053 430 Gene3D - 1 205 IPR023213 -
Vium3868g00053 430 FunFam Tryptamine hydroxycinnamoyl transferase 207 428 - -
Vium3868g00053 430 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 8 428 - -
Vium3868g00053 430 FunFam Spermidine hydroxycinnamoyl transferase 1 203 - -
Vium3868g00053 430 Pfam Transferase family 3 427 - -
Vium3868g00053 430 Gene3D - 210 430 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3868g00053 Vium-Chr3868 231620 233840 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3868g00053 1 430 Monolignol Biosynthesis Gene Families AT5G48930 76.443 0.0 700
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3868g00053 K13065 - gmx:100820075 827.394