Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3868g00048 ATGAGGCCGATGCAACTCCCACCGCCTTCTGCCTCTGGCTCTGGCTCCGCCTCCGCTCCGCCGCCTACCAACAACAAGGATCACCGTCCCCAGCGACGCCGCAAGGACCTCACGCTGCCGCTGCCGCAGCGTGACACTAATTTGGCGGTGCCGCTTCCTCTTCCGCCATCCACGGCTCCGCCCGCGGCCAGCGGAGGAGCCAGCCAGCAGCAGCAGCAGCAACAGCTGGTGATCCCGTTCGCAGAGCTGGAGAGACTGAACCGCATCGGGAGCGGGAGCGGGGGGACTGTGTACAAGGTTGTGCACCGAACTAGCAGGCGCGTGTACGCGCTGAAGGTGATATACGGGCACCACGAGGAGTCCGTGAGGCGGCAGATCCACCGGGAAATCCAGATCCTGCGGGACGTGGACGATCCGAACGTGGTGAAGTGTCACGAGATGTACGATCAGAACAGCGAAATCCAGGTGCTTCTGGAGTTCATGGACGGGGGATCTCTGGAGGGGAAGCACATCCCGCACGAGCAGCAGCTGGCAGATCTGTCCAGGCAGATTCTTCGGGGGCTGGCGTACCTGCACCGGCGGCACATCGTGCACAGGGACATCAAACCCTCGAATCTGCTGATAAACTCGCGGAAGCAGGTGAAGATCGCGGACTTCGGGGTGGGTCGGATTCTGAACCAGACCATGGATCCGTGCAATTCTTCGGTGGGGACGATCGCCTACATGAGTCCGGAGAGGATCAACACGGACATAAACGACGGCCAATACGACGCTTACGCGGGGGACATATGGAGCTTTGGGGTTAGCATATTGGAGTTCTACATGGGCAGATTTCCCTTCGCGGTTGGGAGGCAGGGCGATTGGGCCAGCCTCATGTGCGCTATCTGTATGTCTCAGCCACCCGAGGCTCCTCCCTCTGCCTCCCTCCACTTCAGGGATTTCATCTCTAGGTGCCTCCAGCGGGATCCCTCTCGCCGATGGTCTGCCTCAAGGTTGCTGGAACACCCTTTCATTGCCCTCCCCACTCCAACCACAATCAGCTTCCTCCCAATCTCCACCAGCTCCTACCTCCTCCTCCTCCCAGGCCTCTTCCCTCCTAGCAACCCAACCTGA 1113 0.6074 MRPMQLPPPSASGSGSASAPPPTNNKDHRPQRRRKDLTLPLPQRDTNLAVPLPLPPSTAPPAASGGASQQQQQQQLVIPFAELERLNRIGSGSGGTVYKVVHRTSRRVYALKVIYGHHEESVRRQIHREIQILRDVDDPNVVKCHEMYDQNSEIQVLLEFMDGGSLEGKHIPHEQQLADLSRQILRGLAYLHRRHIVHRDIKPSNLLINSRKQVKIADFGVGRILNQTMDPCNSSVGTIAYMSPERINTDINDGQYDAYAGDIWSFGVSILEFYMGRFPFAVGRQGDWASLMCAICMSQPPEAPPSASLHFRDFISRCLQRDPSRRWSASRLLEHPFIAXLPTPTTISFLPISTSSYLLLLPGLFPPSNPT 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3868g00048 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Vium3868g00048 371 ProSiteProfiles Protein kinase domain profile. 83 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3868g00048 371 MobiDBLite consensus disorder prediction 9 25 - -
Vium3868g00048 371 Pfam Protein kinase domain 84 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3868g00048 371 SUPERFAMILY Protein kinase-like (PK-like) 83 357 IPR011009 -
Vium3868g00048 371 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524
Vium3868g00048 371 CDD PKc_MAPKK_plant_like 81 338 - -
Vium3868g00048 371 SMART serkin_6 83 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3868g00048 371 FunFam Mitogen-activated protein kinase 2 64 162 - -
Vium3868g00048 371 Gene3D Transferase(Phosphotransferase) domain 1 165 345 - -
Vium3868g00048 371 Gene3D Phosphorylase Kinase; domain 1 62 162 - -
Vium3868g00048 371 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 32 340 - -
Vium3868g00048 371 MobiDBLite consensus disorder prediction 26 40 - -
Vium3868g00048 371 MobiDBLite consensus disorder prediction 1 75 - -
Vium3868g00048 371 FunFam Mitogen-activated protein kinase 2 163 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3868g00048 Vium-Chr3868 217736 220038 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3868g00048 1 338 MAP Kinase Kinase Gene Family AT1G51660 70.029 9.52e-166 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Vium3868g00048 Pkinase 2.7e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3868g00048 K13413 - gmx:100818488 570.466