Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3868g00046 ATGAAGGAGAAGGGCAAAGAGAAGGAGACAGAGAAGAAGAAGTATCCGATCGGAGCTGAACATTACCTTCTCTACGAAGAGATTGGTCAGGGCGTCAGCGCTTCTGTTCACCGTGCGCTCTGCGTTCCCTTCAACGAGGTCGTCGCGATCAAAATCCTCGACTTCGAACGTGACAATTGCGATCTGAACAACGTGTCTCGTGAGGCGCAGACAATGATCCTGGTGGACCACCCTAACGTGCTCAAATCACACTGCTCCTTCGTGAGCGAGCACAATCTGTGGGTGGTCATGCCGTATATGTCGGGCGGCTCGTGCCTCCACATACTCAAAGCCGCTCACCCCGACGGGTTTGAGGAGGTTGTGATTGCGACCGTTCTCAAAGAGGTGCTGAAGGGTTTGGAGTACCTTCACCATCACGGCCACATCCACCGCGACGTCAAGGCTGGCAACATTCTCATCGATTCACGCGGCGCCGTCAAGCTTGGCGACTTTGGTGTTTCCGCTTGCCTTTTTGATTCTGGTGACCGCCAACGCACCAGGAATACATTTGTTGGAACTCCTTGCTGGATGGCACCCGAGGTCATGGAGCAACTCCACGGCTACAACTTCAAAGCTGACATCTGGTCATTTGGTATTACCGCCTTGGAGCTTGCTCATGGTCATGCTCCTTTCTCAAAGTATCCACCAATGAAGGTACTGCTCATGACTTTGCAAAACGCACCCCCTAGCCTTGACTACGAAAGGGATAAGAAGTTCTCTAAGTCGTTTAAGCAGATGATTGCTAGCTGCTTGGTAAAAGATCCTTCAAAACGACCCTCTGCAAGCAAGTTGTTAAAGCATTCCTTCTTTAAGCAGGCTCGCTCCAATGATCATATTCGAAGGCTCTTGGAGGGGCTGCCTGCGTTAGGTGATCGAATGGAGGCCCTAAAGAGAAAAGAAGAAGATATGCTCGCACAAAAGAAAATGCCTGATGGTAAGATGGAGGAATTATCACAGAATGAATACAAACGAGGAATTAGTGGCTGGAACTTCAATCTCGAAGATATGAAGGCTCAGGCTTCCTTGATCCATGATTTCGACGATGCTATTACCGATATGAATCATGCAGCAAGTTCAAGTTCTTTAGCTACACTTGATTCACAAGAGAAACCATTACCGAGTGCATTTCACAACCCTTCTCGATCTGTTGATATGGAAGAAAATGATGAGATGCGAAATCAATCAGCTTCTGTTTCTGCAATTGATGCCAAAACTAGGCTTGAAAAATCCAACGATGACTCTTGCATCACCAGTTCGAGCCATGAACCACAAATTAATTCATCCTGTATCGATAATCACGTGGACAATAATTTGGGTGAGAAATCTGACATCGAAAACGGTGGAAGATTGGTGGACGGGATGTCCACCCATCTTCATCATAGAAGAGGATGTTCATCGAGCATCTTACCAGAAGTTGTCTTTCCACCAATTCGACCAGAAAGTGATAAACCGCAAAATCTGCTCCAGAACGGTTCAAGTTGCAATGCAACTTCAGTTCCACAGACAGGAGAGGACGTACTTACTGAACTTCCATCAAAAGTCTCAAAATCACCAGCTAATTCTGAAGACCCTGATGAGAAATCGAAAGTGCCAGTTGTACAGCAGAGAGGACGTTTTAAGGTTACATCTGAAAATGTTGACCCAGAAAAGGTGGGCCCTTCTCCTGTACTGCAAAAGAGTCATAGCATGCAGGTTTTTAGCCAGCATAATGTTGCATCTGTACAACAACCAACTTTGCCATTATTACCAGCATATGAAGCCACATCATCAAATCTTTCGGGTCACGCCGTGTTTCCCATATTGCACTCTGTACTGCAGACAAATATTCTTCAACAGGAAAGCATTTTATGTTTAATGAGGCTTATTACTGCCGGTGACTCTACAGCTGATGGCTCATGTACCCTAGCTCAAATAGCAGGAACTGAAAAATCTTTGCTTGAAGCTGCTCAGGAAAGGGAGAAGGAGTTACTTAGTGAGATAACTGATTTGCAATGGAGGCTTATCTGTGCTCAGGAGGAGCTTCAAAAATTGAAAACAGAAAACGCCCAGGTGTGA 2094 0.4613 MKEKGKEKETEKKKYPIGAEHYLLYEEIGQGVSASVHRALCVPFNEVVAIKILDFERDNCDLNNVSREAQTMILVDHPNVLKSHCSFVSEHNLWVVMPYMSGGSCLHILKAAHPDGFEEVVIATVLKEVLKGLEYLHHHGHIHRDVKAGNILIDSRGAVKLGDFGVSACLFDSGDRQRTRNTFVGTPCWMAPEVMEQLHGYNFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPSLDYERDKKFSKSFKQMIASCLVKDPSKRPSASKLLKHSFFKQARSNDHIRRLLEGLPALGDRMEALKRKEEDMLAQKKMPDGKMEELSQNEYKRGISGWNFNLEDMKAQASLIHDFDDAITDMNHAASSSSLATLDSQEKPLPSAFHNPSRSVDMEENDEMRNQSASVSAIDAKTRLEKSNDDSCITSSSHEPQINSSCIDNHVDNNLGEKSDIENGGRLVDGMSTHLHHRRGCSSSILPEVVFPPIRPESDKPQNLLQNGSSCNATSVPQTGEDVLTELPSKVSKSPANSEDPDEKSKVPVVQQRGRFKVTSENVDPEKVGPSPVLQKSHSMQVFSQHNVASVQQPTLPLLPAYEATSSNLSGHAVFPILHSVLQTNILQQESILCLMRLITAGDSTADGSCTLAQIAGTEKSLLEAAQEREKELLSEITDLQWRLICAQEELQKLKTENAQV 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3868g00046 697 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Vium3868g00046 697 SMART serkin_6 22 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3868g00046 697 Gene3D Transferase(Phosphotransferase) domain 1 103 335 - -
Vium3868g00046 697 FunFam Serine/threonine-protein kinase BLUS1 11 99 - -
Vium3868g00046 697 ProSiteProfiles Protein kinase domain profile. 22 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3868g00046 697 MobiDBLite consensus disorder prediction 425 446 - -
Vium3868g00046 697 FunFam serine/threonine-protein kinase BLUS1 isoform X1 103 335 - -
Vium3868g00046 697 MobiDBLite consensus disorder prediction 374 446 - -
Vium3868g00046 697 Pfam Protein kinase domain 25 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3868g00046 697 MobiDBLite consensus disorder prediction 489 546 - -
Vium3868g00046 697 Gene3D Phosphorylase Kinase; domain 1 10 98 - -
Vium3868g00046 697 SUPERFAMILY Protein kinase-like (PK-like) 20 284 IPR011009 -
Vium3868g00046 697 MobiDBLite consensus disorder prediction 374 388 - -
Vium3868g00046 697 MobiDBLite consensus disorder prediction 532 546 - -
Vium3868g00046 697 MobiDBLite consensus disorder prediction 496 518 - -
Vium3868g00046 697 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 11 692 IPR047173 GO:0043539
Vium3868g00046 697 CDD STKc_OSR1_SPAK 20 283 - -
Vium3868g00046 697 Coils Coil 659 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3868g00046 Vium-Chr3868 201915 209347 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3868g00046 11 679 MAP Kinase Kinase Kinase Kinase AT1G79640 65.051 0.0 858
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Vium3868g00046 Pkinase 6e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3868g00046 K08835 - gmx:100780339 1203.73