Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3868g00045 ATGAAGCTCACGGTGAAGACTTTGAAAGGCAGCCATTTCGAAATTAGGGTTCAGCCCTCCGACACTGTTATGGCTGTCAAGAAGAATATTGAAGATGTACAGAGCAAAGATAATTACCCGTTTGGACAACAAATGTTGATTCACAATGGCAAGGTTTTGAAAGATGAAACTACATTAGTTGAGAACAAAGTCTCTGAAGATGGCTTTCTTGTTGTTATGCTTAGCAAGAGTAAAGCATCAGGCTCTTCTGCAGCTCCATCTGTTCAGCCTGCCAGCAGTCCTGCTACAACTGTATCAACATCCAATTCCAACCCAGCTCCTGATCCTCCAGTGCAGACTCAGGCTGCGAACAACAGCACATCTAGCACGGATGCCCCAATTACCAATGTTTCTGCAGACACTTATGGTCAGGCTGCATCGAATTTAGTTGCTGGTAATAATCTTGAGCAGACTATTCAACAAATCATGGACATGGGCGGTGGCAATTGGGACAGAGACACTGTTAGTCGTGCTCTTCGGGCAGCTTATAATAACCCAGAGCGGGCGATTGATTACTTGTATTCTGGAATCCCTGAACCAGCAGAAGTTGCTGTGCCAGTTCCTAACTACCCAGGTAGTCAAACAACTGAAACAGCTGGGATTCCTTCTGGAGCAGTTCCTGTAGGACCTAATTCATCTCCCTTAAATATGTTTCCTCAGGAGACAATTTCAAGTACTGGGGCCGGACTTGGATCTCTGGACTTCCTTAGAAATAATCCCCAGTTTCAAGCTTTGCGTTCAATGGTGCAATCCAATCCACAAATTCTCCAGCCTGTGCTTCAAGAACTGGGTAAGCAGAATCCTGGTCTTTTAAGACTGATTCAAGAGCATCACGGGGAGTTTCTCCAGTTGATAAATGAACCTGTTGATGGTTCTGAAGGATTTTGA 927 0.4477 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQSKDNYPFGQQMLIHNGKVLKDETTLVENKVSEDGFLVVMLSKSKASGSSAAPSVQPASSPATTVSTSNSNPAPDPPVQTQAANNSTSSTDAPITNVSADTYGQAASNLVAGNNLEQTIQQIMDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEPAEVAVPVPNYPGSQTTETAGIPSGAVPVGPNSSPLNMFPQETISSTGAGLGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPGLLRLIQEHHGEFLQLINEPVDGSEGF 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3868g00045 308 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Vium3868g00045 308 SUPERFAMILY UBA-like 145 196 IPR009060 GO:0005515
Vium3868g00045 308 Gene3D - 236 302 IPR036353 GO:0003684|GO:0006289|GO:0043161
Vium3868g00045 308 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Vium3868g00045 308 FunFam UV excision repair protein RAD23 homolog 141 191 - -
Vium3868g00045 308 Pfam UBA/TS-N domain 148 186 IPR015940 -
Vium3868g00045 308 Pfam XPC-binding domain 246 301 IPR015360 GO:0003684|GO:0006289|GO:0043161
Vium3868g00045 308 SUPERFAMILY XPC-binding domain 243 306 IPR036353 GO:0003684|GO:0006289|GO:0043161
Vium3868g00045 308 CDD UBA1_Rad23_plant 142 191 - -
Vium3868g00045 308 SMART CBM 244 287 IPR006636 -
Vium3868g00045 308 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 300 - -
Vium3868g00045 308 SMART ubq_7 1 75 IPR000626 GO:0005515
Vium3868g00045 308 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 146 189 IPR015940 -
Vium3868g00045 308 SMART uba_6 148 188 IPR015940 -
Vium3868g00045 308 FunFam UV excision repair protein RAD23 1 80 - -
Vium3868g00045 308 NCBIfam UV excision repair protein Rad23 1 306 IPR004806 GO:0006289
Vium3868g00045 308 Gene3D - 141 191 - -
Vium3868g00045 308 MobiDBLite consensus disorder prediction 80 129 - -
Vium3868g00045 308 CDD Ubl_Rad23 1 74 - -
Vium3868g00045 308 Gene3D - 1 80 - -
Vium3868g00045 308 FunFam UV excision repair protein RAD23 B 236 302 - -
Vium3868g00045 308 SUPERFAMILY Ubiquitin-like 1 89 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3868g00045 Vium-Chr3868 189013 196312 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3868g00045 1 88 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 35.227 8.82e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3868g00045 K10839 - gmx:100819019 516.538