Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3868g00026 ATGATGGATTCAAATTCAAAGAAGTGTAACAAGATCCGTGAGGTGGTTAGGCTTCAACAGATCCTCAAGAAGTGGAAGAAAGCTGCAACATCTTCCTCTGCTTCCAACAGTGCAGACATGGTTCCAAAAGGCTTCCTCGCTGTCTGTGTTGGAACAGAGCTCAAGAGATTCATCATTCCCACCCATTACCTGAGACACCAAGCTTTTGAGATTTTGCTCCAAGAAGCCCAAGATGAATTTGGTTTCCAGCAAGAGGGTGTGCTCAAAATCCCATGCCATGTATCAGTCTTCCAGAAAATACTCAAGACCGTGGAGGACAACAACAACAACAACAAACAACCTTTGCTGCATCACTCTGGCTTCCATGGAGACAAGGACAACACTAGTTTTCACGAATCAGATTGTGAAGTTACTCCCCCTCATCATCCTCAAACTTGTACATAG 444 0.4437 MMDSNSKKCNKIREVVRLQQILKKWKKAATSSSASNSADMVPKGFLAVCVGTELKRFIIPTHYLRHQAFEILLQEAQDEFGFQQEGVLKIPCHVSVFQKILKTVEDNNNNNKQPLLHHSGFHGDKDNTSFHESDCEVTPPHHPQTCT 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3868g00026 147 Pfam Auxin responsive protein 17 103 IPR003676 GO:0009733
Vium3868g00026 147 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 22 100 IPR003676 GO:0009733
Vium3868g00026 147 MobiDBLite consensus disorder prediction 118 138 - -
Vium3868g00026 147 MobiDBLite consensus disorder prediction 111 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3868g00026 Vium-Chr3868 134557 135267 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3868g00026 6 143 Calmodulin-binding Proteins AT2G24400 46.154 2.11e-43 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3868g00026 K14488 - vra:106773901 218.779