Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3868g00025 ATGAAACTCTCAAGAAGCTTTTCGATATGCACCCCAAAAATCATTAAGAAAATCCCAAACCATCTGAAATCATCGATACCCAGATCCACAAGCTGGCATATTCAACCTCTTTCCAAGAAGCCATTGCTGGGTTCAGGAGTCTCCTCCGACGGCGGCGCAAGGAATGCCAAGGTTCCCAAAGGCTCCCTCGCCGTCTATGTGGGCCCCCACTTCCGACGCTTCGTCATTCCGGTACGCTTCTTGGCCATGCCTGACTTCGCTGCCTTGATGGAATCCGTCGCCGAAGAATATGGCTGCGATCATCACGGCGCCATTCACATCCCCTGCGATGAAGACCATTTTCAGCAAATTTTGATCTCATGTTCCCAACGAAAACGGACCTTCCTTCCTCCCAAGAAACTTTCCGTCATCCCAATCATAAGCAGCCATTGA 432 0.5023 MKLSRSFSICTPKIIKKIPNHLKSSIPRSTSWHIQPLSKKPLLGSGVSSDGGARNAKVPKGSLAVYVGPHFRRFVIPVRFLAMPDFAALMESVAEEYGCDHHGAIHIPCDEDHFQQILISCSQRKRTFLPPKKLSVIPIISSH 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3868g00025 143 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 40 118 IPR003676 GO:0009733
Vium3868g00025 143 Pfam Auxin responsive protein 50 118 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3868g00025 Vium-Chr3868 133554 133985 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3868g00025 58 118 Calmodulin-binding Proteins AT3G43120 55.738 2.45e-19 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3868g00025 K14488 - vun:114165672 236.498