LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium3868g00023	ATGATGGAAAATGACATGGAGAGCGGTACTTTGGGTCTGGGGGCTTACCCGGACAAGCCCAGAGTTTTCCCAAACATGCGCACTAAACCTTACACCCCTCTGATATTTCGGATTCTGCTCAGTATAAATGTTCGTGTCCTGTTCGTTATTTTGCTCCTTGGGCTGGGTGCTATCTTTTACGTGGGAGCCTGTACCTCTCCAATTATAGTGTTTGTCATCTCTGTTTGCATTCTCAGCTTCCTTGTTGCCATTTATCTTACAAAGTGGGTGCTCGCAAAAGATGAGGGACCTCCTGAAATGGTTCAGATAGCAGATGCTATACGAGATGGAGCTGAAGGATTTTTCAAGACCCAGTATAGTAGCATATCCAAGATGGCCATATTGCTTGCTGTTGTTATTCTATGCATATATTTGTTTCGCAGTACAACTCCTCAACAGGAATCTTCTGGCCTGGGGAGGTCAACTTCTGCATACATCACTGTAGCTGCTTTCCTTTTAGGTGCCCTTTGTTCGGGTATTGCTGGATATGTAGGGATGTGGGTGTCAGTTCGTGCCAATGTCAGAGTTTCTAGTGCTGCAAGACGGTCTGCAAGAGAAGCATTGCAGGTAGCTACTCGTGCAGGTGGTTTATCTGCCCTCATTGTTGTCGGTATGGCTGTAATAGGTATAGCAGTCCTTTATGCCACATTTTATGTTTGGTTGGGAGTGGACTCACCTGGTTCAATGAAGGTTACTGATTTACCTCTTCTTCTAGTTGGATATGGATTTGGTGCTTCCTTTGTTGCTCTATTTGCTCAGTTGGGTGGTGGAATATACACAAAAGCAGCTGATGTTGGAGCAGACCTTGTTGGAAAAGTAGAACAGGGAATACCTGAAGATGACCCTAGGAATCCTGCTGTTATTGCTGATCTGGTTGGTGACAATGTGGGAGATTGTGCTGCTCGAGGTGCTGATCTCTTTGAAAGTATTGCCGCTGAAATAATCAGTGCCATGATACTTGGTGGAACAATGGCCCAACGTTGTAAAATTGCAGATCCATCGGGCTTCATCTTGTTTCCTCTTGTTGTTCATTCCTTCGATTTGGTGGTATCATCAGTTGGAATATTTTCTATTCGGGGAACACGTGAAACTGGATTAATGGCTCCGGTGGAGGATCCGATGACAATTCTTCAAAAGGGATATTCTTTTACGATAGTCTTAGCTGTTCTGGCATTTGGTTTGTCTACCCGCTGGTTACTTTACACTGATCAAGCACCTTCAGCATGGTTCAATTTTGCCTTGTGTGGGTTGATTGGTATTATCACTGCATACATTTATGTCTGGATTGCCAAGTATTATACTGACTACAAGCATGAGCCTGTACGCATATTAGCCCTTTCCAGCTCCACTGGCCACGGGACTAATATAATTGCTGGAGTCAGTTTGGGTCTGGAATCTACTGCTCTTCCTGTCCTTGTCATCAGTGTGTCAATTATCTCAGCTTTCTGGCTGGGTCAGACCTCTGGACTAGTAGACGAATCAGGAACCCCAACTGGTGGGTTGTTTGGCACTGCTGTGGCAACGATGGGAATGCTAAGCACTGCTGCCTATATTCTTACTATGGATATGTTTGGCCCAATAGCCGATAATGCAGGAGGAATTGTGGAGATGAGTCAGCAGCCTGAAAGTGTCCGAGAGATAACGGATGTCCTTGATGCTGTAGGAAACACTACCAAAGCTACCACCAAAGGCTTTGCTATTGGTTCTGCTGCTCTTGCATCTTTCCTTTTGTTTAGTGCTTATATGGACGAAGTTACTGCTTTTGCTCATGAACCTTTTAAACAGGTTGATATTGCAATTCCCGAAGTTTTCGTTGGTGGTTTGCTAGGTTCCATGCTTATATTTGTCTTTAGTGCTTGGGCCTGTTCTGCAGTTGGCAGGACTGCACAAGAGGTTGTTAATGAAGTGAGAAGGCAGTTCATTGAGAGGCCCGGTATAATGGATTACAAGGAAAAACCAGATTATGGTCGCTGTGTTGCTATTGTAGCATCTGCATCATTAAGAGAGATGATAAAACCTGGTGCTTTGGCAATCATTTCACCTATCGTAGTCGGTTTTGTATTCCGAATTTTGGGCTACTATACAGGGCAACCTTTACTCGGGGCTAAAGTGGTGGCTGCTTTGCTCATGTTTGCAACAGTGACTGGTATTCTTATGGCACTTTTTCTGAACACAGCTGGTGGTGCCTGGGATAACGCAAAGAAGTACATTGAGACTGGAGCTCTTGGAGGGAAGGGAAGTGAAGCTCACAAAGCAGCCGTAACAGGAGATACGGTGGGAGATCCATTCAAAGACACAGCTGGTCCTTCAATCCATGTCCTTATAAAGATGCTGGCAACGATTACGCTGGTAATGGCTCCAGTCTTCCTGTGA	2412	0.4494	MMENDMESGTLGLGAYPDKPRVFPNMRTKPYTPLIFRILLSINVRVLFVILLLGLGAIFYVGACTSPIIVFVISVCILSFLVAIYLTKWVLAKDEGPPEMVQIADAIRDGAEGFFKTQYSSISKMAILLAVVILCIYLFRSTTPQQESSGLGRSTSAYITVAAFLLGALCSGIAGYVGMWVSVRANVRVSSAARRSAREALQVATRAGGLSALIVVGMAVIGIAVLYATFYVWLGVDSPGSMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFESIAAEIISAMILGGTMAQRCKIADPSGFILFPLVVHSFDLVVSSVGIFSIRGTRETGLMAPVEDPMTILQKGYSFTIVLAVLAFGLSTRWLLYTDQAPSAWFNFALCGLIGIITAYIYVWIAKYYTDYKHEPVRILALSSSTGHGTNIIAGVSLGLESTALPVLVISVSIISAFWLGQTSGLVDESGTPTGGLFGTAVATMGMLSTAAYILTMDMFGPIADNAGGIVEMSQQPESVREITDVLDAVGNTTKATTKGFAIGSAALASFLLFSAYMDEVTAFAHEPFKQVDIAIPEVFVGGLLGSMLIFVFSAWACSAVGRTAQEVVNEVRRQFIERPGIMDYKEKPDYGRCVAIVASASLREMIKPGALAIISPIVVGFVFRILGYYTGQPLLGAKVVAALLMFATVTGILMALFLNTAGGAWDNAKKYIETGALGGKGSEAHKAAVTGDTVGDPFKDTAGPSIHVLIKMLATITLVMAPVFL	803

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium3868g00023	803	PIRSF	H+-PPtase	62	803	IPR004131	GO:0004427\|GO:0009678\|GO:0016020\|GO:1902600
	Vium3868g00023	803	Hamap	Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA].	66	803	IPR004131	GO:0004427\|GO:0009678\|GO:0016020\|GO:1902600
	Vium3868g00023	803	Pfam	Inorganic H+ pyrophosphatase	77	798	IPR004131	GO:0004427\|GO:0009678\|GO:0016020\|GO:1902600
	Vium3868g00023	803	PANTHER	K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP	93	802	IPR004131	GO:0004427\|GO:0009678\|GO:0016020\|GO:1902600
	Vium3868g00023	803	NCBIfam	V-type H(+)-translocating pyrophosphatase	71	802	IPR004131	GO:0004427\|GO:0009678\|GO:0016020\|GO:1902600

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium3868g00023	Vium-Chr3868	105274	115573	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium3868g00023	1	803	Primary Pumps ATPases	AT1G16780	86.550	0.0	1430

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium3868g00023	K23025		-	gmx:100787805	1446.8