LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium3868g00022	ATGTGGCTTCCAGGTGCAAAGGAATCAATAATTCAAGGTAGAGGAAAAGGAAATGGATTGGTGGCAGTTGCTGTAGAAAAAGATAAAAAAGGGAGCAGACAGGCTCTCAAATGGGCTGCTGACACGCTTCTTTCCAGAGGCCAAACTCTTGTTCTCATCCACGTCTTGCACACAACCTCCTCACCTTTTACCAGTAATTCACCAACCAACATAAACATGAATATATGTAACTGTAATAATCATTCATTCAACCTACTTCTCACTTTTCAAATGTATACATTATTAGGAGGCATGCGCAGCACCAACTGGCCAATTACATCTCCCAAGAAAGACAAACTAGTCAACGTTACAAAGGATCTATTTGAAACCTTTCATTGTTATTGTTCACGCAAAGATATACACTGTCTTGATGTCGTTCTCCAAGATATGGATGTGGTGAAAGGAATAACTGAATATGTCTATTATGCTGCAATTGAGAACTTGGTGGTTGGTGCAGCCTCTAGGCATGGCTTTATTAGATTCAAGACAAGTACACCAAGCAGCATATTAAAGGGAGCCCCGGATTTCTGTAGTGTGTATGTCATTTCTAAGGGGAGAATATCTTCAGTTAGGAGTGCTGCTCGAAGGGCTCCACATGCCTCCCCACTGCAGAGGCAAATAGAAACTCTAAATGATGAGAATGGAAGTGAATATGATACACCCTCCTGTAGACGGTTGAGCTTCAAAAGCAACAGGGTATCACCCAAACCCATAGGCTTGCAAAGTGAATCCATGAACAAGATACAATCAGGCAGAAGATCAGGGACGATTGGAAGGTTATCCATGGATTTCGCCGAACATGACTCTGACATATCGTTTGTAAGCTCTGACAGGCCCAGCAGTGTGCGTTCATCCTCTGTTTTCTATGACCATGTTGAATGTGCCAGAAATGGCCGAACTTCAACCAGTTCAGACCATAGCTGGGGGTCAACATACATGAAACCGAAGCTCACCGAGCCCTGTTCACCGGACCAATTATTTTTAGAGGAAAGTAGCCGCCCATCACTTTACAGTTTGCAACACAATGACGAAGTGGAAGCTGATGTGAGGAGGTTGAGGCTGGAGTTAAAGCAAACAATGGAAATGTACAGTAATGCATGCAAAGAGGCCCTAACAGCGCAGCAGAAGTTACTGGAACTGCACAACTGGAGAATTGAGGAAGAAAAGAAACTAGAGGATGCACGGGTAAACCAGGAAGCAGCAGAGGAAATTGCAGAGAAAGAGAAAGAAAAACGTAAAGCAGCTAAGGAAACAGCAGAAATGGCAAAGAGACTTGCAAGGCTGGAAACAAAGAGAAGAGCAAACGTGGAAGGGAAATATCTGAAAGAAGCAGAGGAAATGAGGAAAGCGTTGAAAAATCTACAAGAGACGGATAAAAGATACAGGAAATACACATTGGAGGAGATTGAAAAGGCAACAAACGAGTTTTCTGAAGCACAGAAAATAGGGGAAGGGGGATATGGTCCCGTGTACAAGTGTTACCTCGATCACACAGCAGTGGCAGTGAAGGTTCTGCGAGCAGGATCAGCACAGGGGGAGACACAATTTCAGCAAGAACTGAACATACTCGGGGCCATAAGACATCCCAACATGGTGCTTCTGGTAGGAGCGTGTCCGGAAGAGGGAGTGCTGATATACGAATACATGGAGAATGGAAGCTTGGAAGACTGTCTGTTCGGAAAGAAGGAGGAGATGAAGAGTTGGGAGTTGAGGTTTGAAATAGCGGCGGAGATAGCGACGGGGCTGCTGTTCCTGCATCAGACAAAGCCAGAACCACTGGTGCACAGAGACCTGAAGCCCGCAAATATATTGCTGGATCACAACTATGTGAGCAAGATAAGCGACGTGGGACTGGCCAGGCTTCTGCCTGCAGCGGTGGCGGAGAACGAGACGCAGTGTCGAATGACTGCCGCAGCAGGAACCTTCTGCTACATCGATCCCGAGTACCAGCAGACCGGAATGCTGGGAGTTAAGTCGGATGTGTATTCTCTGGGAATCGTTATTCTTCAGCTATTGACGGGAAGGCCCGCCATGGGCCTGGCCCACCAGGTCGAACAATCCATCCAGAAGGAGACCTTTGCCCAGATTCTGGACCCATCCGTCCCGAACTGGCCCCTCACAGAGGCCCTCTCCCTTGCCAACTTGGCGCTCCAGTGCGCGCAGCTCAGCCGGAAGGACCGCCCTGACCTTGCCACCTTCCTCCTCCCTCAGCTCCAAATTCTCAGAGACTTTGCTCGCCACCACCATCAACAGCCTCCCCAGGAACAGGAAGTCCTCAGCGAGCCCAATTCTCAACACTCCGGAAGCCCATCGACCCCTTCCCCCTCGTCAACCCCAACAGAAGACCAACCCATACAAGGTTATGAAAAACACGCAAATATTTGGAGACTTGAGATCATTACCGATATCTGA	2451	0.4753	MWLPGAKESIIQGRGKGNGLVAVAVEKDKKGSRQALKWAADTLLSRGQTLVLIHVLHTTSSPFTSNSPTNINMNICNCNNHSFNLLLTFQMYTLLGGMRSTNWPITSPKKDKLVNVTKDLFETFHCYCSRKDIHCLDVVLQDMDVVKGITEYVYYAAIENLVVGAASRHGFIRFKTSTPSSILKGAPDFCSVYVISKGRISSVRSAARRAPHASPLQRQIETLNDENGSEYDTPSCRRLSFKSNRVSPKPIGLQSESMNKIQSGRRSGTIGRLSMDFAEHDSDISFVSSDRPSSVRSSSVFYDHVECARNGRTSTSSDHSWGSTYMKPKLTEPCSPDQLFLEESSRPSLYSLQHNDEVEADVRRLRLELKQTMEMYSNACKEALTAQQKLLELHNWRIEEEKKLEDARVNQEAAEEIAEKEKEKRKAAKETAEMAKRLARLETKRRANVEGKYLKEAEEMRKALKNLQETDKRYRKYTLEEIEKATNEFSEAQKIGEGGYGPVYKCYLDHTAVAVKVLRAGSAQGETQFQQELNILGAIRHPNMVLLVGACPEEGVLIYEYMENGSLEDCLFGKKEEMKSWELRFEIAAEIATGLLFLHQTKPEPLVHRDLKPANILLDHNYVSKISDVGLARLLPAAVAENETQCRMTAAAGTFCYIDPEYQQTGMLGVKSDVYSLGIVILQLLTGRPAMGLAHQVEQSIQKETFAQILDPSVPNWPLTEALSLANLALQCAQLSRKDRPDLATFLLPQLQILRDFARHHHQQPPQEQEVLSEPNSQHSGSPSTPSPSSTPTEDQPIQGYEKHANIWRLEIITDI	816

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium3868g00022	816	CDD	STK_N	20	198	-	-
	Vium3868g00022	816	MobiDBLite	consensus disorder prediction	760	802	-	-
	Vium3868g00022	816	SMART	serkin_6	489	751	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium3868g00022	816	Coils	Coil	355	375	-	-
	Vium3868g00022	816	Pfam	Protein kinase domain	490	743	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium3868g00022	816	Gene3D	Phosphorylase Kinase; domain 1	449	561	-	-
	Vium3868g00022	816	Coils	Coil	397	444	-	-
	Vium3868g00022	816	Coils	Coil	450	480	-	-
	Vium3868g00022	816	Gene3D	HUPs	6	195	IPR014729	-
	Vium3868g00022	816	ProSiteProfiles	Protein kinase domain profile.	489	754	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium3868g00022	816	SUPERFAMILY	Protein kinase-like (PK-like)	475	786	IPR011009	-
	Vium3868g00022	816	Gene3D	Transferase(Phosphotransferase) domain 1	562	777	-	-
	Vium3868g00022	816	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	29	195	-	-
	Vium3868g00022	816	FunFam	Os07g0541700 protein	562	654	-	-
	Vium3868g00022	816	MobiDBLite	consensus disorder prediction	768	797	-	-
	Vium3868g00022	816	PANTHER	OS02G0152300 PROTEIN	21	781	-	-
	Vium3868g00022	816	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	606	618	IPR008271	GO:0004672\|GO:0006468
	Vium3868g00022	816	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	461	561	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium3868g00022	Vium-Chr3868	96294	99756	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium3868g00022	1	790	Receptor kinase-like Gene Family	AT1G78940	52.035	0.0	733

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Vium3868g00022		Pkinase	6.8e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium3868g00022	-		-	gmx:100818471	958.362