Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3868g00020 ATGTATTCCAGCTTGAATTCCCCTTCAAAGCTGAGTGGCTGGAAATCAAGTGGAGGTGATCCTTGTGGTGACTCCTGGGAAGGAATAAAATGTTCAGGCTCTTCTGTCACAGAAATAAAATTGTCAGACATGGGACTTACTGGATCAATGGGCTACCAGTTGGCCAGCTTATCATCAGTAACCTACTTTGATTTGAGCAGCAACAACCTCAAGGGTGATATACCGTATCAACTTCCTCCAAAAGCTCGCCATATAGATCTTTCAAACAATGGCTTCGGGGGAAGTATACCTTATTCATTTTCTCAGATGAATGACCTCACAAACCTAAATCTTGCACATAATAAGCTCCAAAACCAGCTGGGAGATATATTTGAAAAGCTCGGTAAACTCAAACAACTGGATGTATCATTTAATTCTCTATCAGGAGACCTGCCGCAGAGTCTCAAATCGCTCAAAAGCCTCAAGAAGTTGCACCTTCAAAACAACAAATTCACTGGTTCAGTAAATGTTCTTGCCAAACTTCCACTTGATGATTTGAATATCGAAAACAACAAATTTACTGGTTGGGTTCCTAACGAGTTGAAGAATATAAATAAATTGCGAACTGGAGGAAATTCATGGTCAAAGGGACAAGCACCTCCTCCTCCTCCTGGTACTCCCCCCATCGACCAATCCATGAAAAAGAAAGATAAATCAGTTATTAGTGGAGTAGCTATAGCAGGCATAGTTTTTGGCATACTGGCAGTAATTATAATTGTTCTTGCTCTTTCTAAAAGAAAGGCATCGAAAACTTCTTCACACTTTAGCGATGAAGAGAGGAGTAGCCACCGTAGATCTTTTACAACACCCTTTGCATCTCGGGAGTTATCAAAAGATTCGGGTGCTAACCTCAGCAAAGAATCCAAAGGATTTAACTCATTGGATTCTACTTCCATTGACGTAAAGACTTTGCAAAAATCTCCGTCAATTGTCAGGTCGTCTGTCTCCGATTGTGTGCAATCCTTTAATGACAATGAGTTTGCAAATCGTCTAAATGCTAGAAGAAGTACATCAATCCGTGTTACTACTTTTACACTGGCAGAGTTGTACTCGGCTACTGCTAATTTTGCTTCAGCTCGACTTCTTGGTGAAGGATCCATAGGATGTGTTTATCGGGCTAAATATTCTGATGGAAAGGTATTGGCTGTAAAAAAAATCAACCCTTCGCTTCTCCAAGGTCACTCTGAGGAATTCTCGCAGATTGTTTCAAGACTCAGCAAACTTCACCACCCAAATATTGTTGAGCTTGTTGGTTATTGTTCGGAAAAGGAGCATATGCTAATATATGATTATTTTAGAAATGGCTCTCTCCATGGCTATTTACACTTATCAGACGACTTCAGCAATCCACTCACTTGGAACACAAGAATCAGAATTGCATTGGGAACAGCTCGGGCTATTGAGTACCTGCATGATGTTTGTTCTCCTCCTTTATTGCACAAGAATATTAAGACCTCGAATATTTTGCTTGACAATGAACTGAATCCTCGTCTCTCAGACCATGGTTTGGCATCCTTTCACCAGCGTACTAGCCAAAATCTTGGGACGGGATATAATGCACCGGAATGCACAAAACCTTCAGCTTTTACACAGAAGAGTGATGTATACAGTTTTGGGGTAGTGATGCTGGAACTTCTGACAGGTCGAATGGCTTTCGACAGTTCAAGGCCAAAGGCAGAACAATGTCTGGTTCGTTGGGCAACCCCACTTCTTCACGACATTGACGCGGTGGAGAAAATGGTGGACCCTGCCTTGCGGGGGCTTTACCCTCCTAAGTCACTCTTCCGATTTGCAGATACCATTGCTCTCTCTGTTCAGTCTGAGCCTGAATTTCGGCCACCTGTGTCAGAGTTAGTTCAGGCTTTAATGCGATTGGTTCAAAGTTCGAGTCTGACAATGAGGGAGGATTTTGAGTGA 1956 0.4213 MYSSLNSPSKLSGWKSSGGDPCGDSWEGIKCSGSSVTEIKLSDMGLTGSMGYQLASLSSVTYFDLSSNNLKGDIPYQLPPKARHIDLSNNGFGGSIPYSFSQMNDLTNLNLAHNKLQNQLGDIFEKLGKLKQLDVSFNSLSGDLPQSLKSLKSLKKLHLQNNKFTGSVNVLAKLPLDDLNIENNKFTGWVPNELKNINKLRTGGNSWSKGQAPPPPPGTPPIDQSMKKKDKSVISGVAIAGIVFGILAVIIIVLALSKRKASKTSSHFSDEERSSHRRSFTTPFASRELSKDSGANLSKESKGFNSLDSTSIDVKTLQKSPSIVRSSVSDCVQSFNDNEFANRLNARRSTSIRVTTFTLAELYSATANFASARLLGEGSIGCVYRAKYSDGKVLAVKKINPSLLQGHSEEFSQIVSRLSKLHHPNIVELVGYCSEKEHMLIYDYFRNGSLHGYLHLSDDFSNPLTWNTRIRIALGTARAIEYLHDVCSPPLLHKNIKTSNILLDNELNPRLSDHGLASFHQRTSQNLGTGYNAPECTKPSAFTQKSDVYSFGVVMLELLTGRMAFDSSRPKAEQCLVRWATPLLHDIDAVEKMVDPALRGLYPPKSLFRFADTIALSVQSEPEFRPPVSELVQALMRLVQSSSLTMREDFE 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3868g00020 651 MobiDBLite consensus disorder prediction 1 20 - -
Vium3868g00020 651 MobiDBLite consensus disorder prediction 279 306 - -
Vium3868g00020 651 SUPERFAMILY L domain-like 17 201 - -
Vium3868g00020 651 Gene3D Phosphorylase Kinase; domain 1 329 444 - -
Vium3868g00020 651 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 3 639 IPR046959 -
Vium3868g00020 651 MobiDBLite consensus disorder prediction 264 278 - -
Vium3868g00020 651 Gene3D Transferase(Phosphotransferase) domain 1 445 650 - -
Vium3868g00020 651 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 334 444 - -
Vium3868g00020 651 MobiDBLite consensus disorder prediction 264 306 - -
Vium3868g00020 651 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 445 649 - -
Vium3868g00020 651 Gene3D Ribonuclease Inhibitor 1 224 IPR032675 -
Vium3868g00020 651 SUPERFAMILY Protein kinase-like (PK-like) 349 635 IPR011009 -
Vium3868g00020 651 MobiDBLite consensus disorder prediction 200 227 - -
Vium3868g00020 651 Pfam Leucine rich repeat N-terminal domain 2 32 IPR013210 -
Vium3868g00020 651 Pfam Leucine rich repeat 106 164 IPR001611 GO:0005515
Vium3868g00020 651 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 1 218 - -
Vium3868g00020 651 Pfam Protein tyrosine and serine/threonine kinase 373 635 IPR001245 GO:0004672|GO:0006468
Vium3868g00020 651 ProSiteProfiles Protein kinase domain profile. 369 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3868g00020 Vium-Chr3868 80348 84511 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3868g00020 1 650 Strubbelig Receptor Gene Family AT1G78980 60.061 0.0 785
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vium3868g00020 PK_Tyr_Ser-Thr 1.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3868g00020 - - gmx:100785529 1046.57