Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3868g00004 ATGATGTTAGAAGTGGAGGTAATCTCCAAAGAAATCATCAAACCCTCTTCTCCAACCAAGGACCATGTTCGTCATTACCAACTCTCTTTTCTCGATCAAGTTTCTCCCATGGTGTATAACCCTATAGTTCTCTTTTACTCTTGCGACGGTATCACTCAATTCAACAGAACCACCATTTCCGAAAAGCTCAAGAAATCTTTGTCTGATGTTTTAACCCATTTCTACCCGCTTGCCGGGCGAGTCAACGGCAACAGTACTTTTGTAAACTGCTACGACGAGGGTGTTCCCTACTTAGAAGCAAGAGTGAAGTGCAAAGTTGTAGACGTTATTCGCAAACCAGTTCCGGGAGAACTCAACCGTTTGGTTCCATTTCTACTACATGATGTCACCAACATCACATTTGGTGTTCAACTTAATGTTTTTGATTGCGGTGGCATCGCAATCGGAGCTTGCCTTTCACACCAGATCGCAGACGGACTGTCATTTTTCACGTTCCTCAATTGTTGGGCAGCCATTGCTAGGGAGGAAAGTGTGTTGCCAAATCCACAGTTTATTTCAGCTAAGCTCTTCCCACCGAAAAATATATCTGGGTTTGACCCTCGAAGTGGCATCGTGAAGGAGAACATCATCTGCAAGATGTTTGTGTTTGACGGTTCTGTTGTTGAAAATCTTAGAGCAAGATATGCAGCAGGTGCCACTCGAGTGGAGGCCTTATCTGTTTTCATCTGGAGTCGCTATGTGGCTGTCACTAGAAAGCAATCTCTTCCACAGAGAACATATGCTGTGATTCACGCAGTGAACCTGCGTCCAAAGATGGAACCACCACTTCCTCCCGACTCCTTTGGCAACTACTACCGAATCACTATGACAACTTCGTCTTTGAACACCGAAGAGGAGTGTAATGATCTTGATCTAGCGAAACAGGTAAGGGATCAGATAAAGAAGATTGACAAAGATTATGTGAGAAAACTCCAAGATGGAAACGAGCATTCTAATTTCCTGAAGGATATTTCATTTAGAGTGCTTGAGAAGGGGGAACTAGTCTCGTTTAATATTACTAGTTTGTGTAGGTTTCCTTTGTACGACTCTGATTTTGGATGGGGAAAACCAACATGGGTAGGTTCACCCGCTTTAACTTTCAAAAATCTGGTTGTGCTTATAGACGCAAAGAATGGCGGTGGCATAGAGGCTTATGTTAGCTTAAAGGTGGAGGACATGGCAAAGTTCGAGGCAGATGAGGAGTTGCTTGCCTTGGTGAATACACCACGGGCTTCTTCATTCATGCGTGCAATGTGA 1296 0.439 MMLEVEVISKEIIKPSSPTKDHVRHYQLSFLDQVSPMVYNPIVLFYSCDGITQFNRTTISEKLKKSLSDVLTHFYPLAGRVNGNSTFVNCYDEGVPYLEARVKCKVVDVIRKPVPGELNRLVPFLLHDVTNITFGVQLNVFDCGGIAIGACLSHQIADGLSFFTFLNCWAAIAREESVLPNPQFISAKLFPPKNISGFDPRSGIVKENIICKMFVFDGSVVENLRARYAAGATRVEALSVFIWSRYVAVTRKQSLPQRTYAVIHAVNLRPKMEPPLPPDSFGNYYRITMTTSSLNTEEECNDLDLAKQVRDQIKKIDKDYVRKLQDGNEHSNFLKDISFRVLEKGELVSFNITSLCRFPLYDSDFGWGKPTWVGSPALTFKNLVVLIDAKNGGGIEAYVSLKVEDMAKFEADEELLALVNTPRASSFMRAM 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3868g00004 431 Gene3D - 206 418 IPR023213 -
Vium3868g00004 431 Gene3D - 1 197 IPR023213 -
Vium3868g00004 431 Pfam Transferase family 4 415 - -
Vium3868g00004 431 PANTHER F21J9.9 6 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3868g00004 Vium-Chr3868 46294 47932 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3868g00004 3 410 Monolignol Biosynthesis Gene Families AT5G48930 26.818 5.63e-35 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3868g00004 K13065 - gmx:102670206 701.049