Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3868g00002 ATGAAACTGCAAGCACATATTCCGGGGGAGATGTCAGGACAGGTACCTAATCAACCAGGGTCTCAGTTGTCTGGACTGACCCAGCTGAATGGGAATGCACTCGCTCATCAGATGCCACCTTTAGGGGGTGTTCCCCGGTCAACAATTAATATGGATTCTGAATTTCCTAGAGCTCGCACTATTATTCAAGAGGAGATATTTGGTACGTTGTTGCGAAAACAACAGCAGCCAGTTACAGATGTACAGAGAAAGAAGCTTAAGGATCTTGCAAAGCGCTTGGAGGAGGGCATGTTAAAAGCTGCTCGATCTAAGGAGGATTACATGAACTTGGATACTTTGGAGAGTCGATTATCAAATTTCCTCCTACGAGCATCTATGAATAATAAAAACCAACACTATCCGCAACTTGTTAACTCTTCTCCAATCAGTACAATGATACCAACCCCTGGTATGTCACATGCTCCAAATTCAAGCATGATGGTTGCATCTTCTGTGGATGCCTCGATGATTTATGCCAGCGGGTGTAATAGCATAGCATCAACATCTTTCAATAGTGTAAACATGTTACCAGCTGGTGGCATGCTTGGCAGTACCTTAAATAGATTTGATGGTTTGTCTAATGGTTATCAGCAGTCTTCTACCAGCTTTTCTGTTGCCTCAGGGTCGAACATTTCATCAATGGGGGTGCAGAGAATGGCTAGCCAGATGATTCCCACTCCTGGATTCTCAGTCAGCAGCAGTCACTCACACATGAACATAGATTCTAATACTAATGGAGGTGCATTTTCCAGTGTAGATTCTACCATGGTACCATTGTCACAACTTCAGCAGCAGAAGCAGATTGTTGGTGGCCAAAATAGTCATGCATTGCAGAATCTCAACAGTCAAATGGGTATTGGAATGAGATCTGGTTTATTACAGAAGCCATTTACAAACTCAAATGGTGCTATAAATAGTGGATCAGGCTTGATTGGAAACAATATACAGGTTGCAAACGAACCTGGCACTTCTTCTGACAGCTATGCCTCCACTTATGCCAATTCCCCTAAACACTTGCACCAGCACTTTGATCAAAGTCAGAAACCGGTTGTGCAAGAAAGAATAACGATATTATTATCAGGTGATGGATATGGATTAAACAATGTTGACAGTTTTCCTTCTGGAAACTGTTATACATCTGCGACATCCTCTGGGCCCATGATGAACAATCAGAACACTAGTTCTGTTAAAATACCATCTATGCCTAAAACTAGCACATTGTTAAGTGGTCACTCGAACTTGCATGGTATGCAGCAGGCTGCTCATATAAAGTCTCAACAAGTTAACCAGTTAGAAAAGTTGAATTTTCAGTCTTCATTGACTTCAAGAGATGGCTTTCTGCATTCTCAACAGCAATATCAGCAAAGGTCTCAACAATTGCAACAGCCAGATCAGTATGCGCAGCAGCAATTTCAATCTATGCAAAATCAGCATGTGGTCAACAGTGACACTTTCAGTCAGTCTCAGCTTTCTCCCAATCTAGAAAATCGAGTGAAACCTGAGCCTGGAATTGAACACCGCAAAGAAGTGCTCAACTCTCGTGTCTCTGAACCGTTTCATATATCTGAGATGCAGAGTCCGTTCCAGCAGAACTCATCTGAAGATTGCTCTAGGGTTGCTCAACATCTTCCATTTCCATCTGGTCACCATGATTTATCATCATCAACACCTCAAAATTCACAACAAATGTTGCACCAACATCAATTGGCTGCAGAGTCTCAAAATAACTTTAGCGTCGGGGTGCAATCCAAATCTGTGATTCTAAACCATTGGCCTCAGTCACAAGATCCTGACAGTATTTCACATGATCAACATCTCCACGTGGATTTTCATCAAAGAATATCTGGACAAGATGAAGCTCAATGCAATAGTTTATCATCAGATGGATCTATTATAGTTAGAAATGTTCTTTCTAGAGGCTTGGCTGAGCAGCTGGAATCTGGAATTGCTACAAATAAGGCACACAGGAATCAACAGAGGTGGCTTTTATTTCTACTTCATGCTAAGCGATGTTCTGCCCCTGAAGGACGATGTAAAGAGAAGTTTTGTTCTGCTGCACAGATGCTATGCAAGCACATGGATGGATGCAAGCTGCGCCATTGTCCATATCCTCGTTGCCATCATACAAAGGAGTTACTTAATCATTTTGTAAACTGCAAGGATCCAGGTTGTCCTGTTTGTGTTTTTGTGAGAAAGTGTCGACGTGCTTTTCAATTGAAGCCTCAGATTCGGCCAGAACCTGAATCAAGCTTGCCAACTGCAGTGAATGGATCCTGTAGGCCTTACAGTATTGCAGGCACATCACCAAGATTGATCTCAAAGCCTCTATTAGTTGTTGAAACTTCTGAGGACCTCCATCCATCTATAAAACGTATAAAGATTGAGCATTGCACCCAGGCCATTTATCCTGAAAATGACCATTCTGCTTCATCTTTTATTGGAAATTGTGAATCTCTTGTTTCTAGGGATGCTCTGTCTCAACCGCTGCCCTATCCAAATGCTGAGAAGTCTATCTCAATTAAACCTGAGTTTCCAGAAGTTAAGGCCGAAGCTCCTGCAAATGTGATACATGAAAAGCTTAGTGAGATGCAAATGGATAACAATAATGCTGATGATAAAACGCCTAGTGCTGAACTTGTCAAATATGAAGAACCTGCTAATTTAGCAAGCCCTGAAAATATAAAAACTGAGAAAGAAACTGGACAAGACCTGCAAGAAAATGTTGTCCAGACATCTGAAATTCCAACTGGAACCAAGTCTGGTAAGCCAAAAATAAAGGGAGTCTCATTAACTGAGTTATTTACTCCGGAGCAAGTGAGGGAGCATATCACTGGCTTAAGGCAATGGGTTGGTCAGAGCAAGTCAAAAGCAGAGAAGAATCAAGCAATGGAGCATTCAATGAGTGATAATTCGTGTCAATTGTGTGCTGTAGAGAAGCTTACCTTTGAACCACCACCTATTTATTGCACAACTTGTGGGGTTCGCATCAAACGAAATAATATGTATTACACCACAGGCACTGGTGACACACGACATTATTTTTGTATTCCATGCTATAATGATGCTCGTACAGAGAACATAATTGTTGATGGGACTCCCATTGCCAAGTCAAGATTGGAAAAGAAGAAGAATGATGAGGAAACTGAAGAATGGTGGGTTCAATGTGATAAATGTGAAGCGTGGCAACATCAAATTTGTGCCTTATTTAATGGTAGAAGAAATGATGGTGGACAAGCTGAATATACTTGCCCTAACTGCTATATTCAGGAGGTAGAAAGAGGAGAGCGTAAGCCCTTACCCCAAAGTGCTGTCCTTGGCGCCAAGGATTTACCAAGAACTATTCTTAGTGATCACATAGAACAACGATTATTTAGACGGCTAAAGCAAGAAAGACTAGAAAGGGCAAGGCTTCAAGGAAAAAGTTATGATGAGATTCCAGGAGCTGATGCTCTTGTTATAAGAGTTGTGTCATCTGTCGACAAGAAGTTAGAAGTGAAACCACGGTTTCTGGAGATTTTTCAGGAAGAGAATTACCCAACAGAATTTCCATATAAATCAAAGGTAGTTTTGTTGTTTCAGAAGATAGAAGGTGTGGAAGTTTGCCTATTTGGCATGTACGTTCAAGAATTTGGATCTGAATGTCAATTTCCAAATCAGCGCCGAGTGTATCTTTCGTATTTGGATTCTGTGAAGTATTTTAGGCCTGAGGTTAAAGCAGTGACAGGAGAGGCTCTTCGTACTTTTGTTTACCATGAAATTCTGATTGGATACCTTGAATATTGCAAGAAACGTGGTTTTACAAGCTGCTACATATGGGCTTGTCCTCCATTGAAGGGTGAAGATTATATTTTGTACTGCCATCCAGAAATTCAGAAAACACCAAAATCTGATAAGCTACGTGAATGGTATCTATCGATGTTAAGAAAAGCTTCGAAGGAAAATATTGTGGTTGATCTCACCAACTTATACGACCATTTCTTCGTATCAGCTGGTGAATGTAGGGCCAAGGTCACTGCTGCAAGACTCCCATATTTTGATGGTGACTACTGGCCTGGGGCTGCAGAGGATTTAATTTATCAGCTTCGCCAAGAGGAAGATGGAAGAAAACAAAATAAAAAGGGAACAACTAAAAAGACTATAACAAAAAGGGCTTTAAAAGCATCTGGTCAGTCAGATCTTTCAGGAAATGCTTCAAAGGACCTGCTCCTCATGCACAAACTTGGTGAAACCATTTGCCCGATGAAGGAGGATTTCATTATGGTTCATTTGCAGCATGCTTGTATCAGCTGTTGTATCTTAATGGTTTCTGGTAACCGTTGGGTCTGCAACCAGTGCAAGAATTATCAGATTTGTGATAAGTGTTATGAAGTAGAACAAAAGCTTGAAGAGAGAGAAAGACATCCTATTAATCAGAGGGAGAAACATACTCTTTATCCAGTTGAAATTACTGATGTTCCATCTGATACAAAAGACAAAGATGATATTCTTGAGAGCGAATTCTTTGACACTAGACAGGCATTTCTGAGTCTCTGCCAGGGAAACCATTACCAGTATGATACACTAAGGCGGGCCAAACATTCATCAATGATGGTACTCTATCATCTTCACAATCCAACAGCTCCAGCATTTGTGACAACTTGTAATATATGTTATCTTGACATTGAAACTGGTCAAGGATGGCGCTGTGAAGTTTGCCCTGAGTATGATGTATGCAATGCTTGTTATCAAAAGGATGGAGGTATTGATCATCCTCATAAGTTGACAAATCATCCATCCATGGTGGATCGTGATGCTCAGAATAAAGAAGCAAGGCAGCACCGAGTGTCGCAGCTACGAAAAATGCTTGATCTCCTTGTTCATGCATCCCAATGTCGTTCTGCACATTGTCAGTATCCTAATTGTCGCAAGGTGAAGGGGCTTTTCCGCCATGGGATGCACTGCAAAACACGGGCTTCTGGAGGTTGTGTTCTTTGCAAGAAAATGTGGTATTTGCTTCAACTTCATGCTCGTGCTTGCAAAGAATCTGAATGCCACGTACCACGTTGCAGAGATTTGAAAGAACATTTAAGGAGGTTGCAGCAACAGTCTGATTCACGGCGTAGAGCTGCTGTAATGGAAATGATGAGACAAAGAGCTGCAGAAGTTGCTAACAATGCTGGTTGA 5202 0.4135 MKLQAHIPGEMSGQVPNQPGSQLSGLTQLNGNALAHQMPPLGGVPRSTINMDSEFPRARTIIQEEIFGTLLRKQQQPVTDVQRKKLKDLAKRLEEGMLKAARSKEDYMNLDTLESRLSNFLLRASMNNKNQHYPQLVNSSPISTMIPTPGMSHAPNSSMMVASSVDASMIYASGCNSIASTSFNSVNMLPAGGMLGSTLNRFDGLSNGYQQSSTSFSVASGSNISSMGVQRMASQMIPTPGFSVSSSHSHMNIDSNTNGGAFSSVDSTMVPLSQLQQQKQIVGGQNSHALQNLNSQMGIGMRSGLLQKPFTNSNGAINSGSGLIGNNIQVANEPGTSSDSYASTYANSPKHLHQHFDQSQKPVVQERITILLSGDGYGLNNVDSFPSGNCYTSATSSGPMMNNQNTSSVKIPSMPKTSTLLSGHSNLHGMQQAAHIKSQQVNQLEKLNFQSSLTSRDGFLHSQQQYQQRSQQLQQPDQYAQQQFQSMQNQHVVNSDTFSQSQLSPNLENRVKPEPGIEHRKEVLNSRVSEPFHISEMQSPFQQNSSEDCSRVAQHLPFPSGHHDLSSSTPQNSQQMLHQHQLAAESQNNFSVGVQSKSVILNHWPQSQDPDSISHDQHLHVDFHQRISGQDEAQCNSLSSDGSIIVRNVLSRGLAEQLESGIATNKAHRNQQRWLLFLLHAKRCSAPEGRCKEKFCSAAQMLCKHMDGCKLRHCPYPRCHHTKELLNHFVNCKDPGCPVCVFVRKCRRAFQLKPQIRPEPESSLPTAVNGSCRPYSIAGTSPRLISKPLLVVETSEDLHPSIKRIKIEHCTQAIYPENDHSASSFIGNCESLVSRDALSQPLPYPNAEKSISIKPEFPEVKAEAPANVIHEKLSEMQMDNNNADDKTPSAELVKYEEPANLASPENIKTEKETGQDLQENVVQTSEIPTGTKSGKPKIKGVSLTELFTPEQVREHITGLRQWVGQSKSKAEKNQAMEHSMSDNSCQLCAVEKLTFEPPPIYCTTCGVRIKRNNMYYTTGTGDTRHYFCIPCYNDARTENIIVDGTPIAKSRLEKKKNDEETEEWWVQCDKCEAWQHQICALFNGRRNDGGQAEYTCPNCYIQEVERGERKPLPQSAVLGAKDLPRTILSDHIEQRLFRRLKQERLERARLQGKSYDEIPGADALVIRVVSSVDKKLEVKPRFLEIFQEENYPTEFPYKSKVVLLFQKIEGVEVCLFGMYVQEFGSECQFPNQRRVYLSYLDSVKYFRPEVKAVTGEALRTFVYHEILIGYLEYCKKRGFTSCYIWACPPLKGEDYILYCHPEIQKTPKSDKLREWYLSMLRKASKENIVVDLTNLYDHFFVSAGECRAKVTAARLPYFDGDYWPGAAEDLIYQLRQEEDGRKQNKKGTTKKTITKRALKASGQSDLSGNASKDLLLMHKLGETICPMKEDFIMVHLQHACISCCILMVSGNRWVCNQCKNYQICDKCYEVEQKLEERERHPINQREKHTLYPVEITDVPSDTKDKDDILESEFFDTRQAFLSLCQGNHYQYDTLRRAKHSSMMVLYHLHNPTAPAFVTTCNICYLDIETGQGWRCEVCPEYDVCNACYQKDGGIDHPHKLTNHPSMVDRDAQNKEARQHRVSQLRKMLDLLVHASQCRSAHCQYPNCRKVKGLFRHGMHCKTRASGGCVLCKKMWYLLQLHARACKESECHVPRCRDLKEHLRRLQQQSDSRRRAAVMEMMRQRAAEVANNAG 1733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3868g00002 1733 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1052 1100 IPR013083 -
Vium3868g00002 1733 SUPERFAMILY TAZ domain 1617 1700 IPR035898 -
Vium3868g00002 1733 Pfam PHD-finger 1058 1100 IPR019787 -
Vium3868g00002 1733 Gene3D TAZ domain 659 748 IPR035898 -
Vium3868g00002 1733 ProSiteProfiles Zinc finger ZZ-type profile. 1435 1498 IPR000433 GO:0008270
Vium3868g00002 1733 SMART TAZ_2 1618 1696 IPR000197 -
Vium3868g00002 1733 SMART TAZ_2 665 743 IPR000197 -
Vium3868g00002 1733 FunFam Histone acetyltransferase HAC1-like protein 1612 1729 - -
Vium3868g00002 1733 SMART zz_5 1434 1478 IPR000433 GO:0008270
Vium3868g00002 1733 SMART zz_5 1554 1600 IPR000433 GO:0008270
Vium3868g00002 1733 SUPERFAMILY RING/U-box 1415 1489 - -
Vium3868g00002 1733 Gene3D TAZ domain 1612 1729 IPR035898 -
Vium3868g00002 1733 SUPERFAMILY TAZ domain 665 746 IPR035898 -
Vium3868g00002 1733 SMART KAT11_2 1150 1447 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vium3868g00002 1733 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 1117 1553 IPR031162 GO:0004402
Vium3868g00002 1733 ProSiteProfiles Zinc finger TAZ-type profile. 1614 1698 IPR000197 -
Vium3868g00002 1733 ProSiteProfiles Zinc finger ZZ-type profile. 1555 1608 IPR000433 GO:0008270
Vium3868g00002 1733 MobiDBLite consensus disorder prediction 460 508 - -
Vium3868g00002 1733 SUPERFAMILY RING/U-box 1536 1604 - -
Vium3868g00002 1733 MobiDBLite consensus disorder prediction 460 518 - -
Vium3868g00002 1733 MobiDBLite consensus disorder prediction 538 576 - -
Vium3868g00002 1733 Pfam TAZ zinc finger 672 740 IPR000197 -
Vium3868g00002 1733 Pfam TAZ zinc finger 1625 1695 IPR000197 -
Vium3868g00002 1733 Pfam Histone acetylation protein 1157 1377 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vium3868g00002 1733 SUPERFAMILY FYVE/PHD zinc finger 1061 1101 IPR011011 -
Vium3868g00002 1733 MobiDBLite consensus disorder prediction 561 576 - -
Vium3868g00002 1733 FunFam Histone acetyltransferase HAC1 1554 1605 - -
Vium3868g00002 1733 PANTHER CBP/P300-RELATED 85 414 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vium3868g00002 1733 ProSiteProfiles Zinc finger TAZ-type profile. 663 743 IPR000197 -
Vium3868g00002 1733 Gene3D - 1554 1608 IPR043145 -
Vium3868g00002 1733 FunFam Histone acetyltransferase of the CBP family 12 1431 1490 - -
Vium3868g00002 1733 ProSitePatterns Zinc finger PHD-type signature. 1028 1099 IPR019786 -
Vium3868g00002 1733 CDD PHD_HAC_like 1027 1099 - -
Vium3868g00002 1733 Pfam Zinc finger, ZZ type 1557 1596 IPR000433 GO:0008270
Vium3868g00002 1733 ProSitePatterns Zinc finger ZZ-type signature. 1560 1587 IPR000433 GO:0008270
Vium3868g00002 1733 MobiDBLite consensus disorder prediction 328 360 - -
Vium3868g00002 1733 Gene3D - 1431 1491 IPR043145 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3868g00002 Vium-Chr3868 6173 20429 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Vium3868g00002 HAT_KAT11 4.3e-32 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3868g00002 K04498 - gmx:100809207 3141.29